1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgggttcatagatcatattagagtaggggtatatttccttttcccacagcatcatggtctcatcttctgatgtacattttgaacttgcaatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCATTTGCTGAATAGATCCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTC
species | Oryza sativa |
transcript | LOC_Os03g57660.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAG GAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCATEST: gi|218498996|gb|FG968225.1|FG968225
genomic: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAGgtacatcgat ... aatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCAT
EST: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAG GAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCATEST: gi|425889|gb|D22567.1|D22567
genomic: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAGgtacatcgat ... aatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCAT
EST: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAG GAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCATEST: gi|87017363|gb|CI301399.1|CI301399
genomic: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAGgtacatcgat ... aatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCAT
EST: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAG GAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCAT
genomic: ATGACCCTGTGCTGCCTTTTGATTATCAAACATACGCTTCCCAGTTGCAGgtacatcgat ... aatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCAT
ccacagcatcatggtctcatcttctgatgtacattttgaacttgcaatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCATTTGCTGAATAGATCCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTC
ttctgat putative branch site (score: 9)
tacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgggttcatagatcatattagagtaggggtatatttccttttcccacagcatcatggtctcatcttctgatgtacattttgaacttgcaatgtcgcagGAGCATGCAAATGCATTCTCTAGTATGATGGAAAATAGCAAATGGGTTCATTTGCTGAATAGATCCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA