1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggtccattacatcacaatcaattacctgtctctgtgtacatcaggattaacaatgatctgaattttctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTC
species | Oryza sativa |
transcript | LOC_Os03g53250.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGEST: gi|88423479|gb|CI579191.1|CI579191
genomic: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
EST: GATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGEST: gi|218481402|gb|FG945358.1|FG945358
genomic: GATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
EST: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGEST: gi|29661323|gb|CB657598.1|CB657598
genomic: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
EST: GATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGEST: gi|55827804|gb|AU055962.2|AU055962
genomic: GATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
EST: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGEST: gi|58658688|gb|CK047368.1|CK047368
genomic: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
EST: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGEST: gi|29623727|gb|CB628738.1|CB628738
genomic: GGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
EST: ATTCAGAAATATATGATCTCATAATG AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
genomic: ATTCAGAAATATATGATCTCATAATGgtaggtccat ... ctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACG
ttacctgtctctgtgtacatcaggattaacaatgatctgaattttctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTC
gattaac putative branch site (score: 25)
ttttctat putative PPT
tgaattttctataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtccattacatcacaatcaattacctgtctctgtgtacatcaggattaacaatgatctgaattttctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA