1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gccacaaactgctaagatatgcacaattttctaccttattatagcaaggaaccttcagaaggtgaaactgaggatattttttttctgcttcttctgttagCGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTTGAGCAGAATGCATTGGAAACTGCTAGTGAAGAAAAAGCATCCAAAATCA
species | Oryza sativa |
transcript | LOC_Os03g52700.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATGCCCATGGAGCCATGTGGTAGTCTACTTGTTGTTTTCTACCTCCAG CGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTTEST: gi|58678596|gb|CK067283.1|CK067283
genomic: AAATGCCCATGGAGCCATGTGGTAGTCTACTTGTTGTTTTCTACCTCCAGgtaaaaaacc ... cttctgttagCGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTT
EST: AAATGCCCATGGAGCCATGTGGTAGTCTACTTGTAGTATACTACCTCCAG CGTTGTCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTTEST: gi|88569940|gb|CI661115.1|CI661115
genomic: AAATGCCCATGGAGCCATGTGGTAGTCTACTTGTTGTTTTCTACCTCCAGgtaaaaaacc ... cttctgttagCGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTT
EST: AAATGCCCATGGAGCCATGTGGTAGTCTACTTGTTGTTTTCTACCTCCAG CGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTT
genomic: AAATGCCCATGGAGCCATGTGGTAGTCTACTTGTTGTTTTCTACCTCCAGgtaaaaaacc ... cttctgttagCGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTT
aaggaaccttcagaaggtgaaactgaggatattttttttctgcttcttctgttagCGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTTGAGCAGAATGCATTGGAAACTGCTAGTGAAGAAAAAGCATCCAAAATCA
tattttttttctgctt CT-rich tract
atattttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccacaaactgctaagatatgcacaattttctaccttattatagcaaggaaccttcagaaggtgaaactgaggatattttttttctgcttcttctgttagCGTTATCGGTATTTGGAAGCATATGAGGTCGATCGTAGTCTTCAAAGCTTTGAGCAGAATGCATTGGAAACTGCTAGTGAAGAAAAAGCATCCAAAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-ccacaaa
- - - - ctgctaa
- - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - -ccttcag