1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttatagtgtcgattcagcctttacacatagagcttttgctggctttctttttttggtctggaatttgtcactaactgctaaatgttttcccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
species | Oryza sativa |
transcript | LOC_Os03g51650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAG AATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGEST: gi|33381647|gb|CF196990.1|CF196990
genomic: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAGgtatcctttt ... ccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
EST: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAG AATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGEST: gi|25798102|gb|CA754063.1|CA754063
genomic: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAGgtatcctttt ... ccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
EST: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAG AATAACTCACCATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGEST: gi|29669368|gb|CB665643.1|CB665643
genomic: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAGgtatcctttt ... ccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
EST: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAG AATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGEST: gi|33380870|gb|CF196213.1|CF196213
genomic: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAGgtatcctttt ... ccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
EST: TAGNTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAG AATAATTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
genomic: TAGTTCTCATGACTGTATGGTCGTCTTTCTTGGTGCTGCAAATCTTCAAGgtatcctttt ... ccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
ttctttttttggtctggaatttgtcactaactgctaaatgttttcccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
tgttttcccccctgc CT-rich tract
taaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatagtgtcgattcagcctttacacatagagcttttgctggctttctttttttggtctggaatttgtcactaactgctaaatgttttcccccctgcagAATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG
- - - - - - - - - - - -acacata
- - - - - - - - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgct