1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgtttgtgaaagtgccatgactctctcatagtgcattgtttatgaaatatcttagtccatctagcatattttattcaggtgaattaatgtatatgcagGTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTTGGGAAATGGGATGAAAGCATGCACTATGTGATGGGTGATTGCTTTGGAA
species | Oryza sativa |
transcript | LOC_Os03g49770.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGTCAATTATTGATCGTAACCCACATCAG GTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTTEST: gi|163927376|gb|EG709904.1|EG709904
genomic: GAGCAGTCAATTATTGATCGTAACCCACATCAGgtatgcttgt ... gtatatgcagGTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTT
EST: GCAAGTTGAAGTTTAAGGAGCAGTCAATTATTGATC--A-CCCACATCAG GTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTT
genomic: GCAAGTTGAAGTTTAAGGAGCAGTCAATTATTGATCGTAACCCACATCAGgtatgcttgt ... gtatatgcagGTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTT
gaaatatcttagtccatctagcatattttattcaggtgaattaatgtatatgcagGTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTTGGGAAATGGGATGAAAGCATGCACTATGTGATGGGTGATTGCTTTGGAA
aattaat putative branch site (score: 41)
tgaattaatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtttgtgaaagtgccatgactctctcatagtgcattgtttatgaaatatcttagtccatctagcatattttattcaggtgaattaatgtatatgcagGTACAAGGTGTTGTTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTTGGGAAATGGGATGAAAGCATGCACTATGTGATGGGTGATTGCTTTGGAA
- tgtttgt
- - - - - - - - ccatgac
- - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccatc