Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaatatacttttgtttttttccttattatcatatattcctctgcttgcaatccatgtttcttggggtttcttctctgggcaatgtcagttacgcatctttggttagGTATCAATAAGTTACATTGAAACTGCGGCAACCACTATGAAGAGACAGGACGATCTCAAGCACTACTACTTCACTTGCACATGTCCCCGTTGTGTTAAG

Basic information

species Oryza sativa
transcript LOC_Os03g49730.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682029|gb|CK070716.1|CK070716
EST:     GTCGGACAGCATATGTTCGTGCATTGCAACCTATAAGTAAAAATGAGGAG                         GTATCAATAAGTTACATTGAAACTGCGGCAACCACTATGAAGAGACAGGAC
genomic: GTCGGACAGCATATGTTCGTGCATTGCAACCTATAAGTAAAAATGAGGAGgtaatgaata ... ctttggttagGTATCAATAAGTTACATTGAAACTGCGGCAACCACTATGAAGAGACAGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgtttcttggggtttcttctctgggcaatgtcagttacgcatctttggttagGTATCAATAAGTTACATTGAAACTGCGGCAACCACTATGAAGAGACAGGACGATCTCAAGCACTACTACTTCACTTGCACATGTCCCCGTTGTGTTAAG
                                          catcttt  CT-rich tract