1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtattagcttacataggatgaaaggattatcggtatttttctactcatacttgtgattttaacatagacttagatatattatcaccatcggtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTGTAGCTCTAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAG
species | Oryza sativa |
transcript | LOC_Os03g46740.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTEST: gi|58691671|gb|CK080358.1|CK080358
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTEST: gi|29620621|gb|CB625632.1|CB625632
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAGA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTEST: gi|226698432|gb|GO497010.1|GO497010
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTEST: gi|58593744|gb|CF992052.1|CF992052
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTEST: gi|218486282|gb|FG952873.1|FG952873
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTEST: gi|27547660|gb|CA767399.2|CA767399
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: AGAGAATAGCTACGCTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
catacttgtgattttaacatagacttagatatattatcaccatcggtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTGTAGCTCTAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAG
ttttaac putative branch site (score: 2)
attttaacatagactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattagcttacataggatgaaaggattatcggtatttttctactcatacttgtgattttaacatagacttagatatattatcaccatcggtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTGTAGCTCTAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA