1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatgtacctgactaagctattttagttgtgagacaatttcttttccttggtgtcatacttctggctctttatcttagcgatcttacttctttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAG
species | Oryza sativa |
transcript | LOC_Os03g46410.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTG GTTGCAATGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACEST: gi|86261100|gb|CI004665.1|CI004665
genomic: AGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGgtaagtgaaa ... tttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAC
EST: GTTAATGGTATTCTGATGTTCGTTGCATGGCTG GTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAGEST: gi|11025554|gb|AU162155.1|AU162155
genomic: GTTAATGGTATTCTGATGTTCGTTGCATGGCTGgtaagtgaaa ... tttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAC
EST: AGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTG GTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACEST: gi|86494039|gb|CI136672.1|CI136672
genomic: AGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGgtaagtgaaa ... tttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAC
EST: AGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTG GTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACEST: gi|86259320|gb|CI007997.1|CI007997
genomic: AGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGgtaagtgaaa ... tttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAC
EST: GCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTG GTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAC
genomic: GCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGgtaagtgaaa ... tttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCAC
ccttggtgtcatacttctggctctttatcttagcgatcttacttctttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAG
atcttac putative branch site (score: 18)
tcttacttctttc CT-rich tract
tttatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgtacctgactaagctattttagttgtgagacaatttcttttccttggtgtcatacttctggctctttatcttagcgatcttacttctttcaatcagGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAG
- - gtacctg
- - - - - - - - - - - - - - - gagacaa
- - - - - - - - - - - - - - - - - - - - - - - cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctgg