1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagctgtagtagaggtttttttctcttccacgcgcttcacctttgggcttgttgtatatctttgaaccttgtttcttgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG
species | Oryza sativa |
transcript | LOC_Os03g44900.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAG GGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTAEST: gi|58674781|gb|CK063468.1|CK063468
genomic: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAGgtgagctgta ... tgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTA
EST: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAG GGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTAEST: gi|66918088|gb|CX104936.1|CX104936
genomic: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAGgtgagctgta ... tgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTA
EST: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAG GGTGTTGCTTCTGTTTCTACTACTGCAEST: gi|29630458|gb|CB635467.1|CB635467
genomic: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAGgtgagctgta ... tgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCA
EST: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAG GGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTAEST: gi|29638285|gb|CB643294.1|CB643294
genomic: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAGgtgagctgta ... tgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTA
EST: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAG GGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTA
genomic: TTGAAGCACTAGAAGACATGGTTTCACTTGCCCCTTCCAGTCTTGTCAAGgtgagctgta ... tgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTA
gcgcttcacctttgggcttgttgtatatctttgaaccttgtttcttgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG
ccttgtttcttgctt CT-rich tract
tatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgtagtagaggtttttttctcttccacgcgcttcacctttgggcttgttgtatatctttgaaccttgtttcttgcttggcagGGTGTTGCTTCTGTTTCTACTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA