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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccttctttcctttgattgttacggtgcttccatttctactgaattgttttcagttgtgttttgtgtgacttaattggcttagcttaatattgtttgtgttcagagttggtaactgttgctcactaccttgttctgtagATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCCATCAGGACCTAACACTCCAAACTTTGTCAGAGCCGAGGTGCTTCCTAGCGGCTATTTGATCC

Basic information

species Oryza sativa
transcript LOC_Os03g43930.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665470|gb|CK054156.1|CK054156
EST:     ACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTG                         ATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCC
genomic: ACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTGgtattccttc ... tgttctgtagATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCC
EST: gi|58600403|gb|CK010931.1|CK010931
EST:     ACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTG                         ATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCCATCAGGACCTAAC
genomic: ACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTGgtattccttc ... tgttctgtagATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCCATCAGGACCTAAC
EST: gi|29625769|gb|CB630780.1|CB630780
EST:     ACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTG                         ATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCCATCAGGACCTAAC
genomic: ACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTGgtattccttc ... tgttctgtagATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCCATCAGGACCTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatattgtttgtgttcagagttggtaactgttgctcactaccttgttctgtagATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCCATCAGGACCTAACACTCCAAACTTTGTCAGAGCCGAGGTGCTTCCTAGCGGCTATTTGATCC
                                 tgctcac  putative branch site (score: 2)
                                          ccttgttct  putative PPT
     attgttt  TA-rich tract