1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattcacagggttgagtggaagttggtgttgaaatatcttgttattgcaactactatatctgggatgctgtctgatgatgtttgtgttgtcacatgatgcttttctaatgattgatatgcaccactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCCCTCAAGGACTCCTTTTTGGATGAAGG
species | Oryza sativa |
transcript | LOC_Os03g42220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGAGTACTTGGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGAAACCTGGAGGATCCEST: gi|66918817|gb|CX105665.1|CX105665
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
EST: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCCEST: gi|29676853|gb|CB673128.1|CB673128
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
EST: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCANATTCTGAAGATACCTGGAGGATCCEST: gi|29657046|gb|CB653321.1|CB653321
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
EST: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCCEST: gi|29616345|gb|CB621357.1|CB621357
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
EST: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGAAACCTGGAGGATCCEST: gi|218488070|gb|FG946099.1|FG946099
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
EST: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGAAACCTGGAGGATCCEST: gi|58681953|gb|CK070640.1|CK070640
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
EST: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAG GGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGAAACCTGGAGGATCC
genomic: ACAAGGAGTACTTTGCTGAACTTGCTGTTGATGCTGTCCTAAGACTTAAGgtattcacag ... cactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCC
atgtttgtgttgtcacatgatgcttttctaatgattgatatgcaccactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCCCTCAAGGACTCCTTTTTGGATGAAGG
ttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcacagggttgagtggaagttggtgttgaaatatcttgttattgcaactactatatctgggatgctgtctgatgatgtttgtgttgtcacatgatgcttttctaatgattgatatgcaccactgtgcagGGTAGCACAAACTTGGAAGCGATTCAAATTCTGAAGATACCTGGAGGATCCCTCAAGGACTCCTTTTTGGATGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT