1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattttgttcaattgatattgcatttttcctttcaataagttgttcattttgatgatatatgtatatatttttcttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG
species | Oryza sativa |
transcript | LOC_Os03g36790.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTCTCATTCTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAG GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAEST: gi|27547069|gb|CA765194.2|CA765194
genomic: TTGTCTCATTCTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAGgtattttgtt ... ttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAA
EST: TTGTCTCATTCTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAG GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAEST: gi|86417672|gb|CI031881.1|CI031881
genomic: TTGTCTCATTCTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAGgtattttgtt ... ttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAA
EST: CTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAG GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAEST: gi|88223214|gb|CI223063.1|CI223063
genomic: CTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAGgtattttgtt ... ttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAA
EST: TATGGTGGAAG GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAEST: gi|87012849|gb|CI297076.1|CI297076
genomic: TATGGTGGAAGgtattttgtt ... ttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAA
EST: TCTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAG GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAA
genomic: TCTTAGCTCTTTTGGGATTCTTAATTTATGGTGGAAGgtattttgtt ... ttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAA
ctttcaataagttgttcattttgatgatatatgtatatatttttcttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG
ttttgat putative branch site (score: 4)
tatttttcttttgttt putative PPT
attttgatgatatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgttcaattgatattgcatttttcctttcaataagttgttcattttgatgatatatgtatatatttttcttttgtttagGCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC