1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtggatataaactgtggaggcttggcctgtctatagcgaacactaaactttctctggccaaatactttgaaatttacctgacttgctattaaactttcagGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATAACAATGGTGGTCATTCACATGATTTGTCCCTTCCAGTCCTGGAGCGTG
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGACATGATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAG GTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATEST: gi|86903777|gb|CI302423.1|CI302423
genomic: TTGACATGATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAGgtaagtggtt ... aaactttcagGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTAT
EST: GATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAG GTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATEST: gi|88411025|gb|CI606244.1|CI606244
genomic: GATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAGgtaagtggtt ... aaactttcagGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTAT
EST: GGAAGTACAAG GTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTAT
genomic: GGAAGTACAAGgtaagtggtt ... aaactttcagGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTAT
aactttctctggccaaatactttgaaatttacctgacttgctattaaactttcagGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATAACAATGGTGGTCATTCACATGATTTGTCCCTTCCAGTCCTGGAGCGTG
ctttc CT-rich tract
aaatactttgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatataaactgtggaggcttggcctgtctatagcgaacactaaactttctctggccaaatactttgaaatttacctgacttgctattaaactttcagGTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATAACAATGGTGGTCATTCACATGATTTGTCCCTTCCAGTCCTGGAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG