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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagatttgtcctaattttttgcctcttaagattttccaacgaatgtatatgaatataatttcatgaaatgttgactaaactcttataacttgttcacagATTAAAAATAAATTATCCGACAGGAAATATGTTCAAACTGCATGATTGTGCTGTCTGCCAATTGGTGATGAAACCTGGTGAGGGCATCTCTGTTCATGGT

Basic information

species Oryza sativa
transcript LOC_Os03g27780.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g27780.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G077960_T01 (Zea mays), 3'ss of exon 7
---------------------------------------------------------------------atagatttgtccta---attttttgcctcttaagattttcc-----aacgaatgtatatgaat-----ataatttcatgaaatgttgactaaactcttataacttgttcacagATTAAAAATAAATTATCCGACAGGAAATATGTTCAAACTGCATGATTGTGCTGTCTGCCAATTGGTGATGAAACCTGGTGAGGGCATCTCTGTTCATGGT
                                                                     ||  || || |  |   ||||   |  ||     ||||  |     |||   || | ||||||     |||      || ||| | | ||||   ||| || ||||| ||||| || || |||||||| ||   ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
gtcagcatttctttttctttgtgatggatacattttagaattcgtaattaaacaatatgtggtgggagcatgcatctgcctaagagatttggagaatcgatgcatttgtcgcaacaacatttgaacatgaattatacatatccatgtgcaatttggcctaatgacttttatcttgtccacagGTTGAATATAAATTACCCAGAAGGAAATATGTTCAAGCTGCATGATTGTGCTGTCTGCCAATTGGAGATGAAACCTGGTGAGGGCACCTCTGTTCATGGT

upper sequence: LOC_Os03g27780.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G150213_T04 (Zea mays), 3'ss of exon 7
--------------------------------------------------------------------atagatttgtcctaattttttgcctcttaag---attttcc--aacgaa---tgtatatgaat-----ataatttcatgaaatgttgactaaactcttataacttgttcacagATTAAAAATAAATTATCCGACAGGAAATATGTTCAAACTGCATGATTGTGCTGTCTGCCAATTGGTGATGAAACCTGGTGAGGGCATCTCTGTTCATGGT
                                                                    ||  || ||    |    ||||     ||     ||||  |  ||| ||   || |  |||||     |||      || ||| | | |||| | ||| || ||||| ||||| || || |||||||| ||  | |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||
gtcagcattccttgttctgtgtgctggatacgttttatactagtaattaaacgatatgtggtgggagcatgcatctgcataagaggtttggagaatagatgcatttatcgcaacaaaatttgaacgtgaattatacatatccatgtgcaatttggcctaagcacttttatcttgtccacagGTTGAATATAAATTACCCATCGGGAAATATGTTCAAGCTGCATGATTGTGCTGTCTGCCAATTGGAGATGAAACCTGGTGAGGGCACCTCTGTTCACGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatatgaatataatttcatgaaatgttgactaaactcttataacttgttcacagATTAAAAATAAATTATCCGACAGGAAATATGTTCAAACTGCATGATTGTGCTGTCTGCCAATTGGTGATGAAACCTGGTGAGGGCATCTCTGTTCATGGT
                                      ttataac  putative branch site (score: 2)
                                            cttgttc  CT-rich tract
       aatataatttcatgaa  TA-rich tract