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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcacaattgcaaatttgcaattaggatctggtaaatggtacatgcatttgtttttcctttgaaattttaaatagtaaaacccttattcatctctaaccgcacattgacagCACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAGGTGAACTGTTATTGCCAGATAAAATGTTG

Basic information

species Oryza sativa
transcript LOC_Os03g27350.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29646596|gb|CB651603.1|CB651603
EST:     GATATTGCAGCTGATAACTTAGAGGCAGGCACTTCCTCATATCACTGCAG                         CACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGG
genomic: GATATTGCAGCTGATAACTTAGAGGCAGGCACTTCCTCATATCACTGCAGgtatgttcac ... acattgacagCACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttgaaattttaaatagtaaaacccttattcatctctaaccgcacattgacagCACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAGGTGAACTGTTATTGCCAGATAAAATGTTG
                                   ctctaac  putative branch site (score: 2)
      aaattttaaatagtaa  TA-rich tract