1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttttctacattacatactatacaagattttcctgtgacatgcctgttttggcaatctggtatacttgtgtgtttagtatgcaatctagtacaacaaatctcttttgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG
species | Oryza sativa |
transcript | LOC_Os03g25390.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAA ACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGEST: gi|87015371|gb|CI275561.1|CI275561
genomic: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAAgtaagttttt ... tgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCG
EST: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAA ACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGEST: gi|86594199|gb|CI262427.1|CI262427
genomic: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAAgtaagttttt ... tgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCG
EST: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAA ACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGEST: gi|88827221|gb|CI777786.1|CI777786
genomic: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAAgtaagttttt ... tgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCG
EST: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAA ACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCG
genomic: CACAAACTATTGAAACTGGAACACAAACTGCTTCAGCGCTATCACAGCAAgtaagttttt ... tgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCG
tatacttgtgtgtttagtatgcaatctagtacaacaaatctcttttgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG
tctcttttgctttac CT-rich tract
tttagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttctacattacatactatacaagattttcctgtgacatgcctgttttggcaatctggtatacttgtgtgtttagtatgcaatctagtacaacaaatctcttttgctttacagACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA