1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtgtatatttttaatatatttcttgaactacttggtgccttgttgtcattagaacataaatttatcttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCTTGAAGGCAAAGGAGTTTGGTGTCATTGACAAG
species | Oryza sativa |
transcript | LOC_Os03g22430.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCACAACAGGAACACCTTAGTGAGACTTTTAGCAAGGCACACGGGGAAT CCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCEST: gi|8594770|gb|AU093308.1|AU093308
genomic: TGCACAACAGGAACACCTTAGTGAGACTTTTAGCAAGGCACACGGGGAATgtatgtgtat ... cttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCC
EST: CACAACAGGACCCCCTTAGTGAGACTTTTTANCAAGGCACACGGGGAAT CCCCCAGAGAAAATNGACNAGGTGATGAGAGGACCATTTTATATGGATTCCEST: gi|29666270|gb|CB662545.1|CB662545
genomic: CACAACAGGAACACCTTAGTGAGAC-TTTTAGCAAGGCACACGGGGAATgtatgtgtat ... cttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCC
EST: TGCACAACAGGAACACCTTAGTGAGACTTTTAGCAAGGCACACGGGGAAT CCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCEST: gi|2796955|gb|AA750249.1|AA750249
genomic: TGCACAACAGGAACACCTTAGTGAGACTTTTAGCAAGGCACACGGGGAATgtatgtgtat ... cttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCC
EST: ACAACAGGAACACCTTAGTGAGACTTTTAGCAAGGCACACNGGGAAT CCACCAGAGAAAATAGACAAGGTGTATGAGAGGACCATTTTATATGGATTC
genomic: ACAACAGGAACACCTTAGTGAGACTTTTAGCAAGGCACACGGGGAATgtatgtgtat ... cttttatcagCCACCAGAGAAAATAGACAAGGTG-ATGAGAGGACCATTTTATATGGATTC
tcttgaactacttggtgccttgttgtcattagaacataaatttatcttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCTTGAAGGCAAAGGAGTTTGGTGTCATTGACAAG
tttatctttt CT-rich tract
tcattagaacataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtatatttttaatatatttcttgaactacttggtgccttgttgtcattagaacataaatttatcttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCTTGAAGGCAAAGGAGTTTGGTGTCATTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG