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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcaactacatgaaccaatcaaccaatggtcatcttctttgtcagttacaatctgctcaacttcctgctattttccccagGCACCACCAACATGGCCGCTGGCAGGCAAGAATTGGTCGTGTTGCAGGCAACAAGGACTTGTATCTCGGCACCTTTG

Basic information

species Oryza sativa
transcript LOC_Os03g19900.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g19900.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G317160_T01 (Zea mays), 3'ss of exon 6
gtaattttcaactacatgaaccaatcaaccaatggtcatcttctttgtcagttacaatctgctcaacttcctgctattttccccagGCACCACCAACATGGCCGCTGGCAGGCAAGAATTGGTCGTGTTGCAGGCAACAAGGACTTGTATCTCGGCACCTTTG
|||| |||||  ||||  |  | ||||    || |  ||||| |||| |||| |   |   ||  | ||  ||          |||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||  ||||||| || || || |
gtaagtttcagttacagtaggccatca--tgatcgatatcttttttggcagtcatt-ttcacttgatttgttgt---------cagGCACCACCAACATGGACGCTGGCAGGCAAGAATCGGCCGTGTTGCAGGGAACAAGGATCTGTATCTTGGAACTTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtcatcttctttgtcagttacaatctgctcaacttcctgctattttccccagGCACCACCAACATGGCCGCTGGCAGGCAAGAATTGGTCGTGTTGCAGGCAACAAGGACTTGTATCTCGGCACCTTTG
                                   cttcctgctattttcc  CT-rich tract
                                           tatttt  TA-rich tract