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gtaagaagccatccgccactcttgctgttttaatgaattattttgcaagaatcgcctactaagttatgttggtttggacctaacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAATCAGCTCCCCTCCCATTCCACTTACTTGGTGTGCTAGCAAAGAGCTTAA
species | Oryza sativa |
transcript | LOC_Os03g18070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|88661253|gb|CI450560.1|CI450560
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACCAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|87034466|gb|CI189090.1|CI189090
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: CCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|33381930|gb|CF197273.1|CF197273
genomic: CCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|88536660|gb|CI465319.1|CI465319
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACCAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATAGTACAAAGAGCCAGAGAAAEST: gi|88201670|gb|CI202025.1|CI202025
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|29684208|gb|CB680483.1|CB680483
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|29618634|gb|CB623646.1|CB623646
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|88249258|gb|CI249107.1|CI249107
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|86886984|gb|CI324405.1|CI324405
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: AAATCCCACATTACCATGTTTTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|88965936|gb|CI006724.1|CI006724
genomic: AAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAAEST: gi|89195878|gb|CI007297.1|CI007297
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
EST: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCG ACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
genomic: TCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagcc ... taacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAA
aattattttgcaagaatcgcctactaagttatgttggtttggacctaacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAATCAGCTCCCCTCCCATTCCACTTACTTGGTGTGCTAGCAAAGAGCTTAA
acctaac putative branch site (score: 31)
taagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagccatccgccactcttgctgttttaatgaattattttgcaagaatcgcctactaagttatgttggtttggacctaacttgcagACTGAGGCAGCAAAACCAGTGCTGGGAAAATACTACAAAGAGCCAGAGAAATCAGCTCCCCTCCCATTCCACTTACTTGGTGTGCTAGCAAAGAGCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT