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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaactactctttttcataattcgaaaaaaaattcttgctattttttcatcttgtttaagatatttatagGGATGAAACAGATATTTGCAAAGCGCGGAAAATTTCAAAGTTCTATCGAGCACTAGTAACTGGTATCCTTGAAAATGATGAGGTATTGACCTTCCCCCCT

Basic information

species Oryza sativa
transcript LOC_Os03g17920.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33799285|gb|CF325499.1|CF325499
EST:     CAGCTTGCAGCTTATTTTGCTGAAGGCGCTACAAACGCTGGAAAGAGCAG                         GGATGAAACAGATATTTGCAAAGCGCGGAAAATTTCAAAGTTCTATCGAGC
genomic: CAGCTTGCAGCTTATTTTGCTGAAGGCGCTACAAACGCTGGAAAGAGCAGgtataaaact ... atatttatagGGATGAAACAGATATTTGCAAAGCGCGGAAAATTTCAAAGTTCTATCGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataattcgaaaaaaaattcttgctattttttcatcttgtttaagatatttatagGGATGAAACAGATATTTGCAAAGCGCGGAAAATTTCAAAGTTCTATCGAGCACTAGTAACTGGTATCCTTGAAAATGATGAGGTATTGACCTTCCCCCCT
                        tattttttcatcttgt  TA-rich tract