1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatagttagcacgcattgcatgtaaaatgcatctgcaagtgtcatttctatatgactatatctaacttattacctctgcccctgtcacagTGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATCGCTGTACAGACAGAG
species | Oryza sativa |
transcript | LOC_Os03g17120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGG TGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGEST: gi|218494800|gb|FG943469.1|FG943469
genomic: GTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGGgtatagttag ... cctgtcacagTGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAG
EST: GTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGG TGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGEST: gi|29670993|gb|CB667268.1|CB667268
genomic: GTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGGgtatagttag ... cctgtcacagTGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAG
EST: GTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGG TGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAG
genomic: GTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGGgtatagttag ... cctgtcacagTGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAG
caagtgtcatttctatatgactatatctaacttattacctctgcccctgtcacagTGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATCGCTGTACAGACAGAG
atctaac putative branch site (score: 2)
ttacctctgcccct putative PPT
tatatctaacttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagttagcacgcattgcatgtaaaatgcatctgcaagtgtcatttctatatgactatatctaacttattacctctgcccctgtcacagTGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATCGCTGTACAGACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA