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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctgttctatcacaaatacactacatttatcctatattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 13
gtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctag-tgcaaagttcacttac---ttgaattgatttacttc--atcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||  | ||||| | | | |  |  | |  ||||    |   ||||| |||  ||  |   |||||| |||||   || | || | ||  ||   |||||| || |||||||| ||||| |||||||||||||| || || ||  |||||||||||||||||| ||||||||||||||
gtaaatttgttcatctgaaatttgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagttttatttaactttttttctatcagGTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCTGAGACGTTGATGTTTGACTATCACAAGCAGCATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G177373_T02 (Zea mays), 3'ss of exon 7
gtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctag-tgcaaagttcacttac----ttgaattgatttacttc--atcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||  | ||||| | | | || |  | |  ||||    |   ||||| |||  ||  |   |||||| |||||    || | || | ||  ||   |||||| || |||||||| ||||| |||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||
gtaaatttgttcatctgaaaattgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaactttttttctatcagGTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGATGTTGATGTTTGACTATCACAGGCAGCATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G157772_T01 (Zea mays), 3'ss of exon 4
gtacgtctgttctatcacaaatacactac-atttatcctatattttcttaatctag-tgcaaagttcacttac----ttgaattgatttacttc-atcagGAGTC-AGGAGTTGCTATGACGAGGGTAAGCGTGTCGCA-GAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||  | |||||      | ||  |  |  ||||    |   ||||| |||  ||  |   |||||| |||||    || | || | ||  ||| || ||| ||  |||||||| ||||| |||||||||||||| ||| || ||  ||||||| |||||||||||||||||||||||||
gtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttctattagGTGTTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAAGAGACGTTGATGTTCGACTATCACAGGCAGCATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G382038_T01 (Zea mays), 3'ss of exon 8
gtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctag-tgcaaagttcacttac----ttgaattgatttacttc--atcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||  | | ||| | | | || |  | |  ||||    |   ||||| |||  ||  |   |||||| |||||    || | || | ||  ||   |||||| || |||||||| ||||| |||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||
gtaaatttcttcatctgaaaattgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaactttttttctatcagGTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGATGTTGATGTTTGACTATCACAGGCAGCATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 7
gtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctagtgca-aagttcacttac----ttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||  | ||||| | | |||| | || || ||||    |  |||||| |||  ||      |||||  |||||    |||| |||||||  |  ||||||||||||||| || ||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
gtaaatttgttcatctgacaattgcaatatatttgctttg-attttcataaattatcattcaagttatcttacggttttgatttgattttttctatcagGAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGTTCGACTATCACAGGCAGCATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 6
gtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctag-tgcaaagttcacttac----ttgaattgatttacttc--atcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||  | ||||| | | | || |  | |  ||||    |   ||||| |||  ||  |   |||||| |||||    || | || | ||  ||   |||||| || |||||||| ||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
gtaaatttgttcatctgaaaattgaaatttatttgctttggtttttcataaattatctttcaagttctcttacaatttttatttaactttttttctatcagGTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGTTCGACTATCACAGGCAGCATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA12G06990.1 (Glycine max), 3'ss of exon 7
-gtacgtctgttctatcacaaatacactacatttatcctat--attttcttaatctagtgcaa---agttcacttacttgaattgattta-cttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
  |  |    ||    ||    |    |   ||||  | |   ||||| |||||  | || |     ||  |   |||||| |  || || ||| | |||||||  | ||||||||||| ||||| || ||||| || |||||  |||||||||| ||||| ||||||||||| || |
tattagctccttaatgcaaggttgacttttttttaagcaaagaatttttttaatacaatgtattatggtctaaacacttgattatatatatctttaacagGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 7
--gtacgtctgttctatca-caaatacactacat-ttatcctatattttcttaatctagtgcaaagttca---cttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
  | |  |  |    | || | | |  | || ||   ||   ||  | ||||    |  |||    |  |   | ||     |   || |   | | |||||||  ||||||| ||||| ||||| |||||||| ||||||||  |||||||||| ||||| ||||||||||| || |
taggaatttggaatgaccatcgactttaatatataccatatcattatctcttggaatgttgctttatcaatagcctaaacataaaaatatgtatgaacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATCG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA11G15020.1 (Glycine max), 3'ss of exon 7
----------gtacgtctgttctatcacaaatacactacatttatcctatattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
          |     || || |    |||| | | |   |  || | ||||||   ||      |  |  ||  |   |||||| |  || | ||| | |||||||  | ||||||||||| ||||| || ||||| || |||||  |||||||||| ||||| ||||||||||| || |
cttaatgcaaggttaacttttttgaagcaaaga-attttttcaatacaatatttatgtagatgtat-tatggtctaagcacttgattatatat-ctttaacagGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 3'ss of exon 6
gtacgtctgttctatcacaaa--tacactacatttatcctatattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
|||   ||    | |    |   || |    | |  || |  ||||   |  | ||  ||   ||  |||||      ||| | |   |||  ||| ||  |||||||||||||||| || ||||| || || |||||  ||||||||||||| ||||| || ||||||||||
gtaaacctcaaatgttctcatcttatagaggaatcttcttgcatttcagtt-tttacagctttgtaaacttaacctggttgctat-tatcaaaagGGGTTCGGAGTTGCTATGACGAAGGCAAGCGGGTAGCCGAAACCTTGATGTTTGACTACCACAGACAACATGGCATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 7
--gtacgtctgt-tctatcacaaatacactacatttatcct-----atattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
  | |        | | |  |   |    ||  |||||        | |     ||  ||||      | |  |  | | |    | || ||  | | |||||||||||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||||||||||||||||| || |
tagcagactgacatttttggcggctctgttaattttatgtaggaaaaaagaccttttctctaactatgattctatatgccttccgttatatatatta-cagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------gtacgtctgttctatcacaaatacactacatttatcctatatttt----cttaatc-tagtgcaaagttcacttacttga-attgatttacttcat---cagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
                    |||  || |  | ||  |   | ||       | ||  | | |    |  |||| |  | || |    | |  ||| |  ||| ||    || |    |||||| || || |||||||||||||| |||||||| || || || || ||||||||||| || |||||||||||| |||
gtaaatccaactcacgttacacgcttggtgcaccatca-cgctctgtgcagtttctgaactctgatacacaatcattctacacaaaatattaccttaacgttgcttcttgtcttgtgtagGAGTAAGAAGCTGCTATGACGAGGGAAAGCGTGTTGCTGAGACTCTTATGTTTGACTACCATAGGCAGCATGGCGTTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: EFJ17446 (Selaginella moellendorffii), 3'ss of exon 6
gtacgtctgttctatcacaaatacactacatttatcctatattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
                          ||| |  | |  ||||||   |  |||| |||        || | |||    ||          |||| || ||||| ||||| |||||||| || || || || |||||  ||||||||||||||||||||||||| || ||||
-------------------------gtacgtgcaccagatatttgtcttgtctactgc-----ctgctca-ttgtgccgag---------cagGTGTTAGGAGCTGCTACGACGAGGGAAAACGCGTGGCCGAAACGTTGATGTTTGACTATCACAGGCAGCACGGGATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 7
lower sequence: EFJ35029 (Selaginella moellendorffii), 3'ss of exon 6
gtacgtctgttctatcacaaatacactacatttatcctatattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
                          ||| |  | |  ||||||   |  |||| |||          | ||   ||||  | |    | |||| || ||||| ||||| |||||||| || || || || |||||  ||||||||||||||||||||||||| || ||||
-------------------------gtacgtgcaccagatatttgtcttgtctactgc---------ctgctc--attgtgtca----agcagGTGTTAGGAGCTGCTACGACGAGGGAAAACGCGTGGCCGAAACGTTGATGTTTGACTATCACAGGCAGCACGGGATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677155|gb|CK065842.1|CK065842
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGT
EST: gi|33680606|gb|CF308845.1|CF308845
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAA
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAA
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGT
EST: gi|38478163|gb|CF962296.1|CF962296
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATTACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|58672962|gb|CK061648.1|CK061648
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACG
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACG
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGAT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGAT
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|58590735|gb|CF989043.1|CF989043
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTACGCGTGTCGCAGAAA
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAA
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG                         GAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT
genomic: GCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgt ... acttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcagGAGTCAGGAGTTGCTATGACGAGGGTAAGCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG
                                          tttacttc  CT-rich tract
                                    aattgattta  TA-rich tract