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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttttagttcatacctttttgtcttgtgatgtactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG

Basic information

species Oryza sativa
transcript LOC_Os03g16980.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 7
--------------------------gtaatatttttagttcata--cctttttgtcttgtgatg--tactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                            ||||||  ||| |||||  ||| |||||  ||||||   |   || || |  || |   | |  |||||||  || ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
gtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgattttttattaacagtatttatca-tctatgtctgtagAAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 14
--------------------------gtaatatttttagttcata--cctttttgtcttgtgatg--tactggattgtagttctccttaataagtat-tttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                            ||||||  ||| |||||  ||| |||||  ||||||   |   || || |  || |  ||  |||   | |||   |||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
gtaacacttcatctttcacttaaacttcaatattagtagctcatagtcctctttgttatgtgataactctgggcttatgattttttttcttaacagtgtttatcatctatgtctgtagAAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G157772_T01 (Zea mays), 3'ss of exon 5
--------------------------gtaatatttttagttcatacctttttgtcttgtgatgta---ctgga-ttgtagttctcct-taataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                            ||||||  ||| ||||| |  | | | || |||  ||   ||||  || |  || |  | | |  |||||||  || ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
gtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgagataactctgggcttatgatttttttcttaacagtatttatca-tctatgtctgtagAAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G177373_T02 (Zea mays), 3'ss of exon 8
--------------------------gtaatatttttagttcata--cctttttgtcttgtgatg-tactggattgtagttctccttaataa--gtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                            ||||||  ||| |||||  ||| |||||  ||||||    ||||  |   | | |  ||  |||  ||||||  || ||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
gtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgatttttttcttaacggtatttatca-tctatgtctgtagAAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G382038_T01 (Zea mays), 3'ss of exon 9
--------------------------gtaatatttttagttcata--cctttttgtcttgtgatg--tactggattgtagttctccttaata-agtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTA-GGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                            ||||||  ||| |||||  ||| |||||  ||||||   |   || || |  || |  |    | |||||||  || ||||| |||||||| ||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
gtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgatttttttcttgacagtatttatca-tctatgtctgtagAAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 8
-----------------------gtaatatttttagttcata--cctttttgtcttgtgatg--tactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                           || | |||| |||||  ||| ||| |  ||||||   |   || || |  ||   | | |  | |||||   ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||
gtaatacttcatcttgcacttaaactgtaatattagctcatagccctctttattgtgtgataactctaggcttatgatttgtcctcagcaatatttat-aatctatgtctgtagAAATCCGAATTGCCAGGATTTTCAACACCTATGGACCAAGGATGAACATTGACGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G157772_T02 (Zea mays), 3'ss of exon 4
---------gtaatatttttagttcatacctttttgtcttgtgatgta---ctgga-ttgtagttctcct-taataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
           ||||||  ||| ||||| |  | | | || |||  ||   ||||  || |  || |  | | |  |||||||  || ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
acttaaacttcaatattagtagctcatagccctctttgttatgagataactctgggcttatgatttttttcttaacagtatttatca-tctatgtctgtagAAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA12G06980.3 (Glycine max), 3'ss of exon 8
-----------------------------------------gtaatatttttagttcatacctttttgtcttgtgatgtactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                                              |     |||  |    ||    |   || |  || |      ||  ||    | ||   |||||||   | | |      ||| || || ||||| || || || ||||| ||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||| ||  | ||
gtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA15G04500.2 (Glycine max), 3'ss of exon 9
----------gtaatatttttagt-tcatacctttttgtcttgt----gatgtactggattgtagttctccttaat--------------aagtattt-tccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
          ||  | ||||   | | ||  ||| | || ||||    |   ||    || |   || | |||  |              | || ||| |  |  || ||    |||| || || ||||| || || || ||||| ||||||||  | ||||| |||||||||||||||||||| || |||||||||||||| ||  | ||
gtaatttattgtctttttttccttataatttcttctcgttttgtttaaggcatatccaatagagatttttctttgttttttaactccttgaggtgtttatatatcctttcaacatagAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 8
------------------------------------------------------gtaatatttttagttcatacctttttgtcttgtgatgtactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                                                           |     ||| ||    ||    |  ||| |  || |      ||  ||    | ||   |||||||  || | |||||  ||| || || ||||| || || |||||||| ||||||||  | ||||| |||||||||||||||||||| ||||||||||||||||| ||  | ||
gtaattccttatctttattttttccttttctccttggcaacatctcattgattgagggcacaaacagtacacgttttgcactgctgttaactaataagcaataactcaatgtgatgcttattttcatatttttctct-cagAAATACGCATTGCGAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATTGCTCAAGCAATTCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA13G40960.1 (Glycine max), 3'ss of exon 9
---------------------gtaatatttttagttcatacctttttgtcttgtgatgtactggattgtagtt-ctccttaata------agtattt-tccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                      |  || |||    ||||    |||   | | |   |||  |  || |  ||  | |||||         || ||| |     || ||    |||| || || ||||| || || || ||||| ||||||||  | ||||| ||||||||||||||||||||||| |||||||||||||| ||  | ||
gtaatttcttgtcttcttttccttgtaatttcttctcattttgtttacacatatccagtagagatttatctttgtttcttaactccttgtggtgtttatgtctcctttcaacatagAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA12G06990.1 (Glycine max), 3'ss of exon 8
----------gtaatatttttagttcatacctttttgtc---ttgtgatgtactggattgtagttctccttaataagt------attttccaatctatctct----gtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
           |  | |||||  ||||||  | | |||       || | ||   | | | | || | ||   ||| |      | ||| | || | ||| |     |||| || ||  |||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||| || |||||||||||||| ||  | ||
gtaatttcttctcttcttttttcttcatagttgtctgttgctccttgttataactggtagaaatttttctctgtaatttaactgagttttctatatttctttcaacatagAAATACGTGTTGCAAGAATCTTTAACACATATGGGCCGCGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA11G15020.1 (Glycine max), 3'ss of exon 8
-------------------------------------------gtaatatttttagttcatacctttt-tgtcttgtgatgtactggattgtagttctccttaataagt------attttccaatctatctct----gtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                                           ||  | || ||  |   |  ||||| |  ||||| ||   ||||     | || || ||  |||||      | |||   || | ||| |     |||| || ||  |||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||| || |||||||||||||| ||  | ||
gtaatttctgctcttcttttcttcatagttgttgttgattgttgttgttttcttcatagttgtcttttgttccttgttata-gctggtagaaaattttcttttgtaagttaactgagttttttatatttctttcaacatagAAATACGTGTTGCAAGAATCTTTAACACATATGGGCCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCGATTCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaatatttttagttcatacctttttgtcttgtgatgtactggattgtagttctc--cttaataagtatt--ttccaatctat---ctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
|||| |||  |   || |      || |||||  |     ||  ||    || |   || | ||  ||||  ||| | | | |   |  ||||||||| || || || ||||| |||||||| ||||| ||| | ||||||||||||||||| || ||||| || |||||||||||||||||  |  |
gtaaaattaatcactcttttaccattttcttg-aaaactttgatttaagcttattggctgattagttattacttctattgtctggccattgtagAGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 3'ss of exon 7
-------gtaatatttttagttcatacct----ttttgtcttgtgatgtac-----tggattgtagttctccttaat-----aagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
       | | | | |   | ||   | |    |||   | ||| || | |        ||| |  || ||||| ||     || |  |||    |   ||| |||||| ||||| ||||| || || |||||||| ||||| ||  | |||||||| |||||||| |||||||| || ||||||||||| || ||  | ||
gtaagttgcattttctcaggctctcgcttcaactttctccctgtaatttgcatcaacatattctcattgtcctttattccttaaattgtttttgtttcttctttgtagAAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaatatttttagttcat--acctttttgtcttgtgatgtactggatt--gtagttctcctta-ataagtattttccaatctatc-tctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
|| |  ||| || |||    | ||   ||  |     | | ||  ||   ||  |||   | | ||    |||  ||  | | || | |||||| ||||| ||||| || || |||||||| ||||| ||| | |||||||| ||||||||||||||||| || |||||||||||||| ||  | ||
gtcagttttctacttccctaaactcactgcatcacttttttctttatccagtgattcctttaagattctcattggcctgtttgtcatttgtagAAATCCGCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTGTGAGCAACTTCATTGCTCAAGCACTCCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------------------------------------------------------------------gtaatatt-tttagttcatacctttttgtct-----tgtgatgtactggattgtagttctccttaataagtattttccaatc-tatctctgta---gAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                                                                                          |||| ||| || | | | | ||  |   |||     | |||    ||   ||  | | | |  | |    ||||||  |||  |    || ||   ||||| || ||||||||||| ||||| || ||||||||  | ||||| |||||||| ||||||||||| || || ||||||||||| ||  | ||
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctcactt-tattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG

upper sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 8
gtaatatttttagttcatacctttttgtcttgtga--tgtactggat-tgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
||||  ||| |  ||  |   ||  |        |  |  | || || || |||| |  |   || ||  ||||       | |    ||| || || ||||| || ||||||||||| ||||| ||  | ||||| ||||||||||| |||||||| || || ||||| ||||| ||  | ||
gtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33679182|gb|CF307421.1|CF307421
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|702654|gb|D48945.1|D48945
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|33675282|gb|CF303521.1|CF303521
EST:     TGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: TGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|325494210|gb|JG458734.1|JG458734
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|163926814|gb|EG715102.1|EG715102
EST:     GCGTGTCGCAAAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|29663852|gb|CB660127.1|CB660127
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|38478163|gb|CF962296.1|CF962296
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|58602898|gb|CK013426.1|CK013426
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|58669067|gb|CK057753.1|CK057753
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|29668687|gb|CB664962.1|CB664962
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|29637730|gb|CB642739.1|CB642739
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|33680606|gb|CF308845.1|CF308845
EST:     CGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGNGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATT
genomic: CGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATG-GCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATT
EST: gi|29619074|gb|CB624086.1|CB624086
EST:     CGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: CGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|58590735|gb|CF989043.1|CF989043
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|86594978|gb|CI258232.1|CI258232
EST:     ATCACAGACAGCATGCCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: ATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACNNNNNATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|29620631|gb|CB625642.1|CB625642
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|3763827|gb|AU030579.1|AU030579
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG                         AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgtactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
                      ccttaat  putative branch site (score: 4)
                                          tctatctct  putative PPT
                        ttaataagtatttt  TA-rich tract