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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttatttgtctattactcagcatgcctagaattacaatcagctgtgctgtttggtctggattatccttgttctagtgacttgttttttttgctgtgtagAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTAT

Basic information

species Oryza sativa
transcript LOC_Os03g16570.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16570.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G492252_T02 (Zea mays), 3'ss of exon 6
-ttttatttgtctattac--tcagcat--gcctagaattacaatca--gctgtgctgtttggtctggattatccttgttctagtgacttgttttttttgctgtgtagAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTAT
  | |  |     || ||  ||||| |  |   || |  |||  ||  | |  |   || || |  ||| ||  |||||    | ||| | || |   ||  |  |||||||||||||| |||| || || |||| ||||| ||| || |   |||||||  | ||||| |||||||||||||| |||||| | ||||||||||| |
gctgtgatcactgatcaccatcagcttctgtgcagtagcacatgcatggttcagactttgggccacgatgattattgtt----taactcgattct---gccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGATGAACTAACATGTAGTGTTTGCTTAGAGCAAGTCATGGTGGGTGATCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86499240|gb|CI141873.1|CI141873
EST:     TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG                         AAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGAT
genomic: TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGgtaataaata ... tgctgtgtagAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGAT
EST: gi|87009256|gb|CI276570.1|CI276570
EST:     TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG                         AAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGAT
genomic: TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGgtaataaata ... tgctgtgtagAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtttggtctggattatccttgttctagtgacttgttttttttgctgtgtagAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTAT
                                  cttgttttttttgct  CT-rich tract
                                   ttgtttttttt  TA-rich tract