1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acaagctaacttgtaaagaaaagctcagcatgcaaagaaacacatttagacatttccatgctctttggtctgatgtttaaccaatttgatttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT
species | Oryza sativa |
transcript | LOC_Os03g13970.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86431099|gb|CI083522.1|CI083522
genomic: ACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|218485696|gb|FG969920.1|FG969920
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88831185|gb|CI081995.1|CI081995
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGTCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86538942|gb|CI179148.1|CI179148
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: AGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86478545|gb|CI121178.1|CI121178
genomic: AGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|94362977|gb|CI053138.1|CI053138
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: CTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88203319|gb|CI203168.1|CI203168
genomic: CTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88344598|gb|CI637207.1|CI637207
genomic: TGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGCACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|218483651|gb|FG955547.1|FG955547
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86259614|gb|CI065487.1|CI065487
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGAGGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|29673812|gb|CB670087.1|CB670087
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|24468801|gb|CA305750.1|CA305750
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86435819|gb|CI107052.1|CI107052
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CCCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|29686951|gb|CB683226.1|CB683226
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88960606|gb|CI006567.1|CI006567
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: ATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86255672|gb|CI066735.1|CI066735
genomic: ATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: CTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86492426|gb|CI135059.1|CI135059
genomic: CTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: CCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|29638893|gb|CB643902.1|CB643902
genomic: CCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
ttagacatttccatgctctttggtctgatgtttaaccaatttgatttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT
tttctgc CT-rich tract
aatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagctaacttgtaaagaaaagctcagcatgcaaagaaacacatttagacatttccatgctctttggtctgatgtttaaccaatttgatttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
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