1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagccagagaaagaaagaaaaagaaaaacggctgaaatagcgtgagattccggcgagatccgcggctaaccggcggccgccgccgttctttttttttttcttttcagGTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGACCGGTGCGAGTCGCGGCTGTCGGACCACCGGCCGGTGAGGGCGCTGTTC
species | Oryza sativa |
transcript | LOC_Os03g13520.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCTGCGCCTCCCATGGCAGGAAAGGCGAGAAGCGGCGCGCGCCGGCGTG GTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGAEST: gi|86848869|gb|CI295696.1|CI295696
genomic: GGCTGCGCCTCCCATGGCAGGAAAGGCGAGAAGCGGCGCGCGCCGGCGTGgtaagccaga ... ttcttttcagGTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGA
EST: GGCTGCGCCTCCCATGGCAGGAAAGGCGAGAAGCGGCGCGCGCCGGCGTG GTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGA
genomic: GGCTGCGCCTCCCATGGCAGGAAAGGCGAGAAGCGGCGCGCGCCGGCGTGgtaagccaga ... ttcttttcagGTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGA
gcgagatccgcggctaaccggcggccgccgccgttctttttttttttcttttcagGTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGACCGGTGCGAGTCGCGGCTGTCGGACCACCGGCCGGTGAGGGCGCTGTTC
ggctaac putative branch site (score: 6)
ccgccgccgttctttt putative PPT
ttctttttttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccagagaaagaaagaaaaagaaaaacggctgaaatagcgtgagattccggcgagatccgcggctaaccggcggccgccgccgttctttttttttttcttttcagGTGTGACCGGATACTATGGCGCGGCGCCGGGCTGAAGCAGAAGCGGTACGACCGGTGCGAGTCGCGGCTGTCGGACCACCGGCCGGTGAGGGCGCTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT