1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaattgggcctaattttgtctttgttattcagtaatttaaaatttatgtatatatactccatcgttttcatagctttaatttaatttttccttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGCAATGAAGCAGCAGACATGGTTGCTCATCACCCCAATGAACACATCCCA
species | Oryza sativa |
transcript | LOC_Os03g11614.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86598598|gb|CI355215.1|CI355215
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|55408883|gb|CV721259.1|CV721259
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88214367|gb|CI214216.1|CI214216
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|163921223|gb|EG710175.1|EG710175
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|89182938|gb|CI045696.1|CI045696
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|58675506|gb|CK064193.1|CK064193
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: ACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86837774|gb|CI343239.1|CI343239
genomic: ACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGGGEST: gi|41882727|gb|BX928063.1|BX928063
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|89186090|gb|CI047959.1|CI047959
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88511021|gb|CI438527.1|CI438527
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCA-GGTGACCATTCCCTNCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86822847|gb|CI251887.1|CI251887
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATTTGAGEST: gi|7378313|gb|AU088584.1|AU088584
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: AGGGTGNCCATTCCCTGCAGA-TGG GTATCATCACCCCTCATGCTCACCATCACCAGGCCCTACATGGACCATCTGEST: gi|88475833|gb|CI413104.1|CI413104
genomic: AGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCA-CCCTCATGCTCACCATCACCAGG-CCTACATGGACCATCTG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|5004673|gb|AU069848.1|AU069848
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|89167327|gb|CI252858.1|CI252858
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|55439464|gb|CV733040.1|CV733040
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTTTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATTTGAGEST: gi|163925591|gb|EG710756.1|EG710756
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88474220|gb|CI411491.1|CI411491
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTCCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATTTGAGEST: gi|86836485|gb|CI348364.1|CI348364
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: TCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|87029597|gb|CI257392.1|CI257392
genomic: TCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86599173|gb|CI355790.1|CI355790
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATGTGAGEST: gi|7378312|gb|AU088583.1|AU088583
genomic: GGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86501334|gb|CI143967.1|CI143967
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88502115|gb|CI429621.1|CI429621
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: ACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88958121|gb|CI095644.1|CI095644
genomic: ACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86493995|gb|CI136628.1|CI136628
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86837055|gb|CI347585.1|CI347585
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: CAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86826007|gb|CI362444.1|CI362444
genomic: CAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: CCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|33812530|gb|CF332153.1|CF332153
genomic: CCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: TCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|32948430|gb|BP185002.1|BP185002
genomic: TCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88218263|gb|CI218112.1|CI218112
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88253783|gb|CI352409.1|CI352409
genomic: GGTCTTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: CATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|86600469|gb|CI356226.1|CI356226
genomic: CATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: TCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGEST: gi|88472010|gb|CI409281.1|CI409281
genomic: TCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
EST: TTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGG GTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
genomic: TTCTCCACCCTCACCCAGATCAGGGTGACCATTCCCTGCAGATTGGgtattcttct ... cttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAG
atgtatatatactccatcgttttcatagctttaatttaatttttccttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGCAATGAAGCAGCAGACATGGTTGCTCATCACCCCAATGAACACATCCCA
atttaat putative branch site (score: 85)
tttaatttttcctt CT-rich tract
ttttcatagctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattgggcctaattttgtctttgttattcagtaatttaaaatttatgtatatatactccatcgttttcatagctttaatttaatttttccttggtgaagGTATCATCACCCTCATGCTCACCATCACCAGGCCTACATGGACCATCTGAGCAATGAAGCAGCAGACATGGTTGCTCATCACCCCAATGAACACATCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - tatgtat