1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgacaatcagtattttatttattgcaacgtaatgcatgtagtttatactgcaatcgttttagatttactgaataacactgtttcttctattctttaacagAAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGAGATGTCTCTGGAGCACGTGTAGAATACCAGCATCTTTATTCTGATCTGT
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGAACTAGCAAACAATGCTCTGGCTCGTGCCACTCATGTTTTTGTCAAG AAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGAEST: gi|29666429|gb|CB662704.1|CB662704
genomic: TAGAACTAGCAAACAATGCTCTGGCTCGTGCCACTCATGTTTTTGTCAAGgtatcacata ... tctttaacagAAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGA
EST: TAGAACTAGCAAACAATGCTCTGGCTCGTGCCACTCATGTTTTTGTCAAG AAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGA
genomic: TAGAACTAGCAAACAATGCTCTGGCTCGTGCCACTCATGTTTTTGTCAAGgtatcacata ... tctttaacagAAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGA
tactgcaatcgttttagatttactgaataacactgtttcttctattctttaacagAAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGAGATGTCTCTGGAGCACGTGTAGAATACCAGCATCTTTATTCTGATCTGT
gaataac putative branch site (score: 27)
ctgtttcttctattct CT-rich tract
ttttagattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgacaatcagtattttatttattgcaacgtaatgcatgtagtttatactgcaatcgttttagatttactgaataacactgtttcttctattctttaacagAAGCAGGCAGAGATCCATCTGTTCAGTGCAAGATTCAAGGAGCTTAGTGGAGATGTCTCTGGAGCACGTGTAGAATACCAGCATCTTTATTCTGATCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- acaatca
- - - - - - - - - -tattgca
- - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca