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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgaaagactgtaccaagtaatttgtgcctttcaaaaatgaacggagggatagttacttaatacttaggcattaccttgtggtacatacatatttgcagTGGGGAGGAAGAGACAGCGCATCTGTTGCTTGGGAAATTCAAGTGGGGTCACTCGTTCTTGTCAGTTAACAG

Basic information

species Oryza sativa
transcript LOC_Os03g09920.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g09920.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G114758_T01 (Zea mays), 3'ss of exon 7
----------------tttgaaagactgtaccaagtaatttgtgcctttcaaaaatgaacggagggatagttactta-atactt--aggcattaccttgtggtacatacatatttgcagTGGGGAGGAAGAGACAGCGCATCTGTTGCTTGGGAAATTCAAGTGGGGTCACTCGTTCTTGTCAGTTAACAG
                | | || ||   |     | ||| ||   ||   | ||       |   |||   || ||| ||||||  |||||| | ||| |  |   ||||||||||||||||||||||||| ||||||||| || ||||||||||||| || ||||||||| | ||||||||  | |||||
gtaatttttaagcatttcttaacgatattgtttgg-aatatgaagctcatataatcctttagcttgatttataattagatacttccaggcatcagcttattttgtgtacatatttgcagTGGGGAGGAAGATACAGCGCATTTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagggatagttacttaatacttaggcattaccttgtggtacatacatatttgcagTGGGGAGGAAGAGACAGCGCATCTGTTGCTTGGGAAATTCAAGTGGGGTCACTCGTTCTTGTCAGTTAACAG
           acttaat  putative branch site (score: 4)
     atagttacttaata  TA-rich tract