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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG

Basic information

species Oryza sativa
transcript LOC_Os03g09250.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 7
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc--tgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
|| ||  |  ||  | |  |    | |  |    |    | |  |  |    |||| ||| |||  ||| |||| || |  |   ||  |   ||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| |
gtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGCGGCAAGAGCACCATCGTGCTGCACAACACCTGCG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G010768_T01 (Zea mays), 3'ss of exon 1
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa----aaacttagttttggattaaaacttgtccatgtattcttc---tgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
 ||||  |  ||  | |  |    | |  |  ||  |||   |  |  |    |||| ||| |||  ||| ||||||| |||   |||  |    |||||||||||| ||| || |||||||| |||||||| |||||||||||||| |||||||||||||||||  | |||| ||||||||| || |||||||||| ||
atttgttagctgatcttccacctcttta-aaaagcttgcaggtgcagtagtttaaacgtagatttacattgaaacttg-ccactcatttgttgcatgcagTATGTGCTGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGCAGCAAGAACACCATCGTGCTACACAACACCTATG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 3
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc---tgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
|| ||  |  ||  | |  |    | |  |    |    |||  |  |    |||| ||| |||  ||| ||||||| |||   |||  |    |||||||||||||||| || ||||| || |||||||| |||||||||||||| ||||||||||| |||||  | |||| ||||||| | |||||||||||||| |
gtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttg-ccactcatttgttgcatgcagTATGTGCCGTACGTGGGAGATAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTTATGGGCAGCAAGAACACCATCATGCTGCACAACACCTGCG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 5
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc--tgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
|| |   |  |   | |  |    | |  |    |    |||  |  |    |||| ||| |||  ||||||||||| |  |   ||  |   |||||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||| || |||| ||||||||| ||||||||||||||||
gtctattagctaatcttccacctctttaaaaagctggcacatgcagcagtttaaacgtagatttacattaaaacttgccactcctttgctgcatgcagTATGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGTGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
|| ||  |  ||  | |  |  | ||   |  ||| || |||    |   ||   || |||  ||| |||||||||  | |  | |  |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||
gtctgttagctgatctttca--cctcgttaaaagt-tgacat----atgcaaggcagatttacattgaaacttgtcactct--tttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 7
---------------gtttgcaatttgtccatggattctt-ctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtcca-tgtatt-cttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
                | |     || |  | | ||  ||  | || |  | |  || ||          | ||   |  ||  |   | ||   | | || | | ||||||||||||| || || || || |||||||| || ||||| |||||||| |||||||| ||||||||                                   
gtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttctttctcttgtcagGTCTTTGATTCTATCTGCTTTGTTGCCTTTGCAGTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGT----------------------------------

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 4
---gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
    |||    ||| |   |  ||| ||   ||  | |    | || |||   || |   | ||   || | ||||     | | |  || ||||||| ||||| ||||| || |||||||||||||| ||||| |||||||| || ||||| |||||||| || |||| ||| || ||  |||||||||| ||||
gtaattttt--tttatttttttatttttagtcactactccctctttcaaattcaattggttatttttttgacactttggtttat-tgtttttgcagTACGTGCCTTATGTAGGGGACAGCAAGAGGGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGAAAGAACACAATTGTGTTGCACAACACATGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattc-ttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
    | ||||| |   |  | ||     |  |  | |   ||| ||      |||  ||| |  |      |  |  || ||||  || |||||||||| || || ||||| |||||||||||||| ||||| |||||| | || ||||| |||||||| || |||| ||| || ||  |||||||||| ||||
----gtaatttttatttttagtcactcact-ctctttcaaattcaattggttctttattt-gactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA18G02210.4 (Glycine max), 3'ss of exon 7
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
   |  | ||  | ||   ||| |||   |    | |  | |              || || ||||  | ||  |   |   | | | ||||||||||||| || || || || |||||||| || ||||| |||||||| |||||||| |||||||| || |||| |||||| ||| |||||||||| ||||
--gtatatttgtttcacccatttttcactatttctttctctt---------gtcaggtctttgattctatctgctttgt---tgcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGTGGAAAGAACACCATTGTTTTGCACAACACATGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 7
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
||    |||||  | ||  ||| |  |       ||| | ||  || |||    |    ||    ||||   |     || ||  |  ||||||||||||| | ||| |||||||||||||| |||||||| || ||||| |||||||| |||||||| || |||| ||| || ||  |||||||||| ||||
gtgattaattttactattaattataat-------tatccaatctaacaaa----tcacattaacataaattatactattggatggtgttgcagTATGTGCCATGTGTAGGAGACAGCAAGAGAGCAATGGATGAATACACATCAGAGATATTCATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttgga---ttaaaacttgtccatgt----attcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
|||||   ||    ||  |       || | || |    | ||       || |   ||||  |   ||||| | ||    |||    | | || ||||||||||||| |||||||  || || || || |||||||| |||||||| || ||||| |||||||| || | || ||| || ||  |||| ||||| ||||
gtttgattttgaatcagaggccagagtg-atcaattcctcctttctttttaagtacattttaaagtcttaaatcctgctattgttctgaatgttttgcagTATGTGCCATATGTTGCGGATAGTAAAAGAGCAATGGATGAGTACACGTCTGAGATATTCATGGGAGGGAGGAACACTATAGTGTTGCATAACACTTGTG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 7
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattc-ttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
    | || | |   |  |      |      |   ||    |      || || || |      |  | |   |   ||| ||  || || ||||||| ||||||||||  || || ||| | || |||||||||||||| |||||||| |||||||| || |||| ||| || ||  ||||||| ||||| |
----gtaaatagagaaccggacagacactcaaaacctgtttctgttggcaatctgagatccca--ttgatccaatttgtgtgtttgttttgtagTATGTACCGTATGTTGCGGATAGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATTGTGATGCACAATACCTGCG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 7
------------gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttg--gattaaaacttgtccatgtattc--ttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
                 |  |||||   |   |  | |     ||| ||||   |    |   | | | | |    |  ||| | |   |  |||  |   |  ||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || ||||| |||||||| || ||||||||||| || |||||||||||||| |
gtatatcgcagaaccctccttttgtttgtatgtattacaatt-cag-atgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcagTATGTGCCATATGTTGGAGATAGCAAGAGAGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGGAAGAGCACCATTGTGCTGCACAACACCTGCG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
----------------------------------gtttgcaa-----tttgtccatggattcttctgc--agcagtatgccattaaaaaaaaacttagttttggattaaaacttg--tccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
                                  |||| |||     || | |  ||  |||     |  ||  || |||  | | |   |  ||    | |   |   |||     || |||    | ||||||||| || || ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||    | ||| |||||  ||||||| || || |
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 7
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggatta----aaacttgtccatgtattct---tctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
                                         | ||| |||  |||  ||||    ||    |||||      | |  | |   | |  ||||||| || || || || || |||||| |||| |||||||| ||||| || ||||| |||||||| || | |||||||||||   |||||||||| || |
----------------------------------------gtaaaacaaacgcttgatttttttctagggaaaactcccgagtttgctttcgttttctagTATGTTCCTTACGTCGGTGATAGCAAGCGGGCCATGGACGAATACACGTCCGAGATATTCATGGGAGGCAGGAGCACCATCGCCATGCACAACACTTGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29686334|gb|CB682609.1|CB682609
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|3760166|gb|C97424.1|C97424
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|11443012|gb|BF430899.1|BF430899
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218494828|gb|FG945589.1|FG945589
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58685454|gb|CK074141.1|CK074141
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|163929263|gb|EG711024.1|EG711024
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCA
EST: gi|218504141|gb|FG945017.1|FG945017
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58657984|gb|CK046664.1|CK046664
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|38479690|gb|CF963779.1|CF963779
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218485553|gb|FG949786.1|FG949786
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 68 (downstream exon)
Score: 161

CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG
                                          tattcttct  CT-rich tract
     aaaaaaaaacttagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA