1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agtagttatattatagtgcaactcatgctctatagttattgtactggtcatgttcgacgaattgatggctcacccttgactactctcctgtccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAGCGTAGAATTAAAATGGCCCTTGATGTG
species | Oryza sativa |
transcript | LOC_Os03g06410.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAG GGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAEST: gi|569642|gb|D40491.1|D40491
genomic: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
EST: CTGTTACTCGTNCTCCAAACTTATCTATTGTATCCTGAGTATCTTCCCAG GGGAAGCTTATATAAGEST: gi|2799344|gb|AA752333.1|AA752333
genomic: CTGTTACTCGTCCTCCAAACTTATCTATTGTATC-TGAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAG
EST: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAG GGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAEST: gi|25803481|gb|CA759450.1|CA759450
genomic: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
EST: GAGTA-CTTCCAAG GGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAEST: gi|58596848|gb|CK007376.1|CK007376
genomic: GAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
EST: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAG GGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAEST: gi|571627|gb|D41138.1|D41138
genomic: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
EST: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAG GGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAEST: gi|58688165|gb|CK076852.1|CK076852
genomic: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
EST: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAG GGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
genomic: GCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaat ... tccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAA
ggtcatgttcgacgaattgatggctcacccttgactactctcctgtccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAGCGTAGAATTAAAATGGCCCTTGATGTG
ctactctcctgtcctt CT-rich tract
aattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagttatattatagtgcaactcatgctctatagttattgtactggtcatgttcgacgaattgatggctcacccttgactactctcctgtccttggcagGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAGCGTAGAATTAAAATGGCCCTTGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - -gtgcaac
- - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgg