1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttttttgctgcatgtttttacatcatttttattttgatgagtacaatagtatttcagtcaaattgatctgacctttttttttatatataatgtttaaagTATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGACCCTTCTTTAACTATGAAACATG
species | Oryza sativa |
transcript | LOC_Os03g04140.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCATGATTGCTGCTGGTTCCCTTGTTTTAAAGGATGTACCTCCCCACAG TATGGCAGTAAGAAACCCTGCAAAGGTAGTTGGGTATAAAGAEST: gi|86492726|gb|CI135359.1|CI135359
genomic: GCCATGATTGCTGCTGGTTCCCTTGTTTTAAAGGATGTACCTCCCCACAGgttaggagct ... atgtttaaagTATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGA
EST: GCCATGATTGCTGCTGGTTCCCTTGTTTTAAAGGATGTACCTCCCCACAG TATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGAEST: gi|38480201|gb|CF964290.1|CF964290
genomic: GCCATGATTGCTGCTGGTTCCCTTGTTTTAAAGGATGTACCTCCCCACAGgttaggagct ... atgtttaaagTATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGA
EST: GCCATGATTGCTGCTGGTTCCCTTGTTTTAAAGGATGTACCTCCCCACAG TATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGA
genomic: GCCATGATTGCTGCTGGTTCCCTTGTTTTAAAGGATGTACCTCCCCACAGgttaggagct ... atgtttaaagTATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGA
aatagtatttcagtcaaattgatctgacctttttttttatatataatgtttaaagTATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGACCCTTCTTTAACTATGAAACATG
atctgac putative branch site (score: 50)
tgacctttttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttgctgcatgtttttacatcatttttattttgatgagtacaatagtatttcagtcaaattgatctgacctttttttttatatataatgtttaaagTATGGCAGTAGGAAACCCTGCAAAGGTAGTTGGGTATAAAGATAAGGAAGACCCTTCTTTAACTATGAAACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- tttttgc
- - - - -tgcatgt
- - - - - - - - - - - - - - - - - ttgatga