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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagagtggtttttttgacatgttctttttgctgatcactattctagtactttgtcatgtgttaccagctaagagcatccttaaaaatataatttcaagagttgaataatgtctggcagGTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA

Basic information

species Oryza sativa
transcript LOC_Os03g02170.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G092776_T01 (Zea mays), 3'ss of exon 9
gtatagagtggtttttttgacatgttctttttgctgatcactattctagtactttgtcatgtgttaccagctaagagcatccttaaaaatataatttcaagagttgaataatgtctggcagGTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA-----------------------------
                               |   ||    ||||||  || |||||  | ||   ||   |    | |   |||   | |||  ||      |||| |||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||                             
------------------------------gtatggaatg-tattctcata-tttgttttatgaatcctagtcgctgtaat-ttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAGTAATGTTCAGGGTTTTGTACTCTGCCTT

upper sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 9
gtatagagtggtttttttgacatgttctttttgctgatcactattctagtactttgtcatgtgttaccagctaagagcatccttaaaaatataatttcaagagttgaataatgtctggcagGTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
                               |   ||    ||||||  || |||||  | ||   ||   |    | |   |||   | |||  ||      |||| |||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
------------------------------gtatggaatg-tattctcata-tttgttttatgaatcctagtcgctgtaat-ttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagctaagagcatccttaaaaatataatttcaagagttgaataatgtctggcagGTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
                ttaaaaatataatttc  TA-rich tract