1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtcgaacaccactcacctttgttcattagcatgtcataatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAGTACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG
species | Oryza sativa |
transcript | LOC_Os03g01850.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88268788|gb|CI378723.1|CI378723
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|3766971|gb|AU031081.1|AU031081
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAANTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|29662032|gb|CB658307.1|CB658307
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88446676|gb|CI526509.1|CI526509
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: GTCCCTACTCTTGACCCTGCTGG-TTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGGTAGACAGGCTCTTEST: gi|88559037|gb|CI489575.1|CI489575
genomic: GTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGNTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88253212|gb|CI351838.1|CI351838
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAAACAAAAAGGATCACAGCTAGACAGGCTCEST: gi|88978284|gb|CI384727.1|CI384727
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAA-CAAAA-GGATCACAGCTAGACAGGCTC
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|86885548|gb|CI318699.1|CI318699
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCCGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|89196147|gb|CI397149.1|CI397149
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88437700|gb|CI531259.1|CI531259
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTEST: gi|88488941|gb|CI426212.1|CI426212
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAAT-GCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88509819|gb|CI437325.1|CI437325
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCANACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88437696|gb|CI531255.1|CI531255
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|38482398|gb|CF966438.1|CF966438
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|66915263|gb|CX102111.1|CX102111
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTEST: gi|88522726|gb|CI450366.1|CI450366
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
aatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAGTACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG
tctcgtttc CT-rich tract
aaaaaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgaacaccactcacctttgttcattagcatgtcataatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAGTACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG