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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacaaaacagcataaagattttattaggcgggtgaactgcatccatatactgtgccactgatattccttgactgaaatcttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT

Basic information

species Oryza sativa
transcript LOC_Os03g01850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01850.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 6
gtatgacaaaacagcataaagattttattaggcgggtg----aactgcatc-catatactgtgcca---ctgatattccttgactgaaat-------------cttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT
   | |   ||||||||||  ||||   | |||   ||    || |||||    ||| ||   |||   || | | ||  ||  ||  ||             || |||  ||||  || |||||  | ||||| | ||||||||||||||| |||||||||||||||
--gtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33803869|gb|CF327809.1|CF327809
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88268788|gb|CI378723.1|CI378723
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|3766971|gb|AU031081.1|AU031081
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAANTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|29662032|gb|CB658307.1|CB658307
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88559037|gb|CI489575.1|CI489575
EST:     TTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGNTTTGGACCTTCTC
genomic: TTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88253212|gb|CI351838.1|CI351838
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88978284|gb|CI384727.1|CI384727
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86885548|gb|CI318699.1|CI318699
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|89196147|gb|CI397149.1|CI397149
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88437700|gb|CI531259.1|CI531259
EST:     TTAGCTCATTACCTGAGTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88488941|gb|CI426212.1|CI426212
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88509819|gb|CI437325.1|CI437325
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88437696|gb|CI531255.1|CI531255
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|38482398|gb|CF966438.1|CF966438
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|66915263|gb|CX102111.1|CX102111
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88522726|gb|CI450366.1|CI450366
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGgtatgacaaa ... ttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgcatccatatactgtgccactgatattccttgactgaaatcttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT
                                           tcttcatccc  CT-rich tract
          atatact  TA-rich tract