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gtactggtcttagcaatttcagttcttgctctcagtctctctaagtttgtggatttttttccattgctcattgtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATAACATATATGCAG
species | Oryza sativa |
transcript | LOC_Os02g58590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATAAATGGAEST: gi|33795166|gb|CF323456.1|CF323456
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGA
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATAEST: gi|29626072|gb|CB631083.1|CB631083
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATA
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATAEST: gi|29628398|gb|CB633409.1|CB633409
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATA
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATACATGGAGAAGTGAAGAAAAA-GCTTTGAGTTATAATGAAATAEST: gi|29666803|gb|CB663078.1|CB663078
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATA
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATANATGGAGAAGTGAEST: gi|33797216|gb|CF324472.1|CF324472
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGAGAAGTGA
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATAEST: gi|29681006|gb|CB677281.1|CB677281
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATA
EST: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAG GATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATA
genomic: GTATCAGACATCAGTGGCTTCAAAGTTTCCACTATTTATATCTCAGgtactggtct ... gtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATA
gctctcagtctctctaagtttgtggatttttttccattgctcattgtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATAACATATATGCAG
attttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggtcttagcaatttcagttcttgctctcagtctctctaagtttgtggatttttttccattgctcattgtaattgcagGATGGAATAAATGGAGAAGTGAAGAAAAAAGCTTTGAGTTATAATGAAATAACATATATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA