1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaccacacctttctaggatagacaaaatgtaacttgctgctgaatttcatttaattactccctgtcccatagaagttaatttattatttgatcgaacagGTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGATGTCTACAGTTACGGTGTTGTCTTGCTGGAGCTTTTATCAGGAAGGAAG
species | Oryza sativa |
transcript | LOC_Os02g57080.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCAACTAATGGAATTCAACCCATTTCTACTAGGGTAATGGGTACTTTTGG GTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGAEST: gi|58685240|gb|CK073927.1|CK073927
genomic: GCAACTAATGGAATTCAACCCATTTCTACTAGGGTAATGGGTACTTTTGGgtaaggcaca ... gatcgaacagGTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGA
EST: GCAACTAATGGAATTCAACCCATTTCTACTAGGGTAATGGGTACTTTTGG GTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGAEST: gi|58599593|gb|CK010121.1|CK010121
genomic: GCAACTAATGGAATTCAACCCATTTCTACTAGGGTAATGGGTACTTTTGGgtaaggcaca ... gatcgaacagGTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGA
EST: CCATTTCTACTAGGGTAATGGGTACTTNTGG GTACGTTGCTCCAGAATATGCCAGGGGCGGGCATCTTCTTGTGAAGAGTGA
genomic: CCATTTCTACTAGGGTAATGGGTACTTTTGGgtaaggcaca ... gatcgaacagGTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGA
tttcatttaattactccctgtcccatagaagttaatttattatttgatcgaacagGTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGATGTCTACAGTTACGGTGTTGTCTTGCTGGAGCTTTTATCAGGAAGGAAG
atagaagttaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaccacacctttctaggatagacaaaatgtaacttgctgctgaatttcatttaattactccctgtcccatagaagttaatttattatttgatcgaacagGTACGTTGCTCCAGAATATGCCATGACCGGGCATCTTCTTGTGAAGAGTGATGTCTACAGTTACGGTGTTGTCTTGCTGGAGCTTTTATCAGGAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA