1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcttgttcacctcgtattttcatccataagctgtcttcctacacttctttttttggttcctgattttcctagttatattgaagcatcaatatgttgctcgtggtttgtcagGATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGACATTTACGAGGCAGATGGAATTAGTACGGTTGCTGCATCGGAACCTTTG
species | Oryza sativa |
transcript | LOC_Os02g57060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGTGGCCTTTTTCCTGAAGGAATCGAAATTGCAAAGATTTG GATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGAEST: gi|86493848|gb|CI136481.1|CI136481
genomic: CGGTGGCCTTTTTCCTGAAGGAATCGAAATTGCAAAGATTTGgtaagcttgt ... ggtttgtcagGATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGA
EST: CGGTGGCCTTTTTCCTGAAGGAATCGAAATTGCAAAGATTTG GATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGAEST: gi|29688368|gb|CB684643.1|CB684643
genomic: CGGTGGCCTTTTTCCTGAAGGAATCGAAATTGCAAAGATTTGgtaagcttgt ... ggtttgtcagGATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGA
EST: CGGTGGCCTTTTTCCTGAAGGAATCGAAATTGCAAAGATTTG GATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGA
genomic: CGGTGGCCTTTTTCCTGAAGGAATCGAAATTGCAAAGATTTGgtaagcttgt ... ggtttgtcagGATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGA
ttcctgattttcctagttatattgaagcatcaatatgttgctcgtggtttgtcagGATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGACATTTACGAGGCAGATGGAATTAGTACGGTTGCTGCATCGGAACCTTTG
tcctgat putative branch site (score: 5)
tagttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgttcacctcgtattttcatccataagctgtcttcctacacttctttttttggttcctgattttcctagttatattgaagcatcaatatgttgctcgtggtttgtcagGATGGACAAGGGTGTTATTGTATACATATGTGATAGCCAGGGTGTTCGTGACATTTACGAGGCAGATGGAATTAGTACGGTTGCTGCATCGGAACCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC