1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgctttggtcttgtctcctacctatactttactaacatatgcctattcctgttttggcgttttatctcataatttgtacttctgtagGAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAACTTACGAGGAGAAGAGTTTTGACAATGGAGTGGGTATCTGGTGAAAATC
species | Oryza sativa |
transcript | LOC_Os02g56200.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGCGAGTTGGACTACAATATTGAAGCTGCTAATGCTACCAAATTCCTG GAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAAEST: gi|3768340|gb|AU032367.1|AU032367
genomic: TTGGCGAGTTGGACTACAATATTGAAGCTGCTAATGCTACCAAATTCCTGgtgctttggt ... acttctgtagGAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAA
EST: TTGGCGAGTTGGACTACAATATTGAAGCTGCTAATGCTACCAAATTCCTG GAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAAEST: gi|84117294|gb|CD151061.1|CD151061
genomic: TTGGCGAGTTGGACTACAATATTGAAGCTGCTAATGCTACCAAATTCCTGgtgctttggt ... acttctgtagGAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAA
EST: TTGGCGAGTTGGACTACAATATTGAAGCTGCTAATGCTACCAAATTCCTG GAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAA
genomic: TTGGCGAGTTGGACTACAATATTGAAGCTGCTAATGCTACCAAATTCCTGgtgctttggt ... acttctgtagGAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAA
taacatatgcctattcctgttttggcgttttatctcataatttgtacttctgtagGAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAACTTACGAGGAGAAGAGTTTTGACAATGGAGTGGGTATCTGGTGAAAATC
tactaac putative branch site (score: 0)
tacttct putative PPT
ttttatctcataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttggtcttgtctcctacctatactttactaacatatgcctattcctgttttggcgttttatctcataatttgtacttctgtagGAATATCATTCCAGATATTCATTTATGCTGGTTCCAAAGGTTCTCAAGCAACTTACGAGGAGAAGAGTTTTGACAATGGAGTGGGTATCTGGTGAAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA