1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agtcttagacatgcttctactgaccattatctatcaatactttatgaatgcttcattaatatattatctaagtaatggttggatgtgccatggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGTCTGGTAGGCTGGACCGAAAAATTGAGTTCCCTCATCCATCCGAAGAAG
species | Oryza sativa |
transcript | LOC_Os02g56000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86415267|gb|CI069670.1|CI069670
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCCAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29660288|gb|CB656563.1|CB656563
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88832202|gb|CI017436.1|CI017436
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86497811|gb|CI140444.1|CI140444
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88844827|gb|CI022181.1|CI022181
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89168359|gb|CI109563.1|CI109563
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29682547|gb|CB678822.1|CB678822
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGTTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88967851|gb|CI098093.1|CI098093
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: AGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86415268|gb|CI069671.1|CI069671
genomic: AGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCCAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|87031011|gb|CI270159.1|CI270159
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86890008|gb|CI319997.1|CI319997
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: T-GAGTTGCT-AATCAGCTAGAT-GATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89183716|gb|CI046281.1|CI046281
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89186657|gb|CI114366.1|CI114366
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89164849|gb|CI101937.1|CI101937
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88828977|gb|CI073847.1|CI073847
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATAAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|8859408|gb|AU096726.1|AU096726
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89198421|gb|CI007481.1|CI007481
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86424028|gb|CI062789.1|CI062789
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29626138|gb|CB631149.1|CB631149
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86413371|gb|CI067776.1|CI067776
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: CTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86432781|gb|CI086392.1|CI086392
genomic: CTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: GGAGTCTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|8527269|gb|AU092084.1|AU092084
genomic: GGAGT-TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29661398|gb|CB657673.1|CB657673
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88906488|gb|CI375560.1|CI375560
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: GGAGTTGCT-AATCAGCTAAATGG-TTCAGTACTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86523662|gb|CI163868.1|CI163868
genomic: GGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: CTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86413599|gb|CI019184.1|CI019184
genomic: CTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|94362567|gb|CI052686.1|CI052686
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88250010|gb|CI249859.1|CI249859
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|22304809|gb|BQ906031.1|BQ906031
genomic: TAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88849565|gb|CI089473.1|CI089473
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29659490|gb|CB655765.1|CB655765
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86858935|gb|CI275141.1|CI275141
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86490885|gb|CI133518.1|CI133518
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: GGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGTEST: gi|86414336|gb|CI068739.1|CI068739
genomic: GGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: NGGAGTTGCTGAATNAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86425390|gb|CI070487.1|CI070487
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: CGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88971395|gb|CI017709.1|CI017709
genomic: CGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88980148|gb|CI026437.1|CI026437
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86413980|gb|CI068187.1|CI068187
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCCAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88221331|gb|CI221287.1|CI221287
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29615761|gb|CB620773.1|CB620773
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88906424|gb|CI375496.1|CI375496
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86490630|gb|CI133263.1|CI133263
genomic: TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: GCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86420002|gb|CI054803.1|CI054803
genomic: GCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|11173135|gb|AU164630.1|AU164630
genomic: TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29615719|gb|CB620731.1|CB620731
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86593962|gb|CI260191.1|CI260191
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|218495770|gb|FG962501.1|FG962501
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88833193|gb|CI076676.1|CI076676
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29683382|gb|CB679657.1|CB679657
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|88833497|gb|CI076978.1|CI076978
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATGAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29682519|gb|CB678794.1|CB678794
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGTTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|87018818|gb|CI256703.1|CI256703
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|86823621|gb|CI258693.1|CI258693
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29615715|gb|CB620727.1|CB620727
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89185134|gb|CI049680.1|CI049680
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|89197922|gb|CI117400.1|CI117400
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29684874|gb|CB681149.1|CB681149
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|33815577|gb|CF333641.1|CF333641
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGEST: gi|29615721|gb|CB620733.1|CB620733
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
gaatgcttcattaatatattatctaagtaatggttggatgtgccatggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGTCTGGTAGGCTGGACCGAAAAATTGAGTTCCCTCATCCATCCGAAGAAG
cattaat putative branch site (score: 3)
ttcattaatatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcttagacatgcttctactgaccattatctatcaatactttatgaatgcttcattaatatattatctaagtaatggttggatgtgccatggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGTCTGGTAGGCTGGACCGAAAAATTGAGTTCCCTCATCCATCCGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG