1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagctggaggacctggaattggtgaatttatccttttggttcagcatggaactagttcttcagagatcatgagctatttgtcacttgatgaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGCCATCTTGGACTGAAGACGAAGATCCGCTGGTACCCTTGGTACTCAGCT
species | Oryza sativa |
transcript | LOC_Os02g55130.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|86504237|gb|CI146870.1|CI146870
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|86503050|gb|CI145683.1|CI145683
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|86517525|gb|CI157731.1|CI157731
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|29664011|gb|CB660286.1|CB660286
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|88956207|gb|CI092495.1|CI092495
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|29676175|gb|CB672450.1|CB672450
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGTTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|88218970|gb|CI220530.1|CI220530
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGEST: gi|88968080|gb|CI098322.1|CI098322
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
EST: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAG TGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
genomic: CCGACTTACAAGTTGCTGATGAAGGCCGGGCTGAGGATATGGGTGTTCAGgtgagctgga ... gaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAG
catggaactagttcttcagagatcatgagctatttgtcacttgatgaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGCCATCTTGGACTGAAGACGAAGATCCGCTGGTACCCTTGGTACTCAGCT
acttgat putative branch site (score: 5)
atgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctggaggacctggaattggtgaatttatccttttggttcagcatggaactagttcttcagagatcatgagctatttgtcacttgatgaaaatgcagTGGCGACACGGATTCAGTCGTTCCGGTTACTGCAACGAGGTTTGCGCTTAGCCATCTTGGACTGAAGACGAAGATCCGCTGGTACCCTTGGTACTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT