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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattttaagttgaggcatgtcttgttatctttgcttaaaatgctattacttttctgaaagaccaatgattcttgaacttatggatatgataatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCAGAACTCGTTGCTGGACATACTTG

Basic information

species Oryza sativa
transcript LOC_Os02g53060.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53060.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G152775_T04 (Zea mays), 3'ss of exon 7
aattttaagttgaggcatgtcttgttatctttgcttaaaatgctattacttttctgaaagaccaatgattcttg-----aacttatggatatgataatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCAGAACTCGTTGCTGGACATACTTG
     ||  |      |    ||  ||| |||||||    |    |    | |   | |||||  |  || | |     |||  |      ||   ||  |||||||||| || ||||| ||   |||||| ||| ||||||| ||||| ||||  |||||||| || |||||||| ||||||||||||||||| || || ||||
-----tatctcttactaccatttcctatgtttgcttgtgttctcttcctctgtggcatagacccttttttgtggttcaaaacaaactctcttggctatgctgcagATAAATGCGGATGGCGTGAAGAGGAACTTTTACCCTGGCGACAAGCTACCCCTGTGGCACGACGAGCTGGAACCCCAGAACTCGTTGCTTGATATTCTTG

upper sequence: LOC_Os02g53060.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G374881_T02 (Zea mays), 3'ss of exon 7
------aattttaagttgaggcatgtcttgttatctttgcttaaaatgctattacttttctgaaagaccaatgattcttgaacttatggatatgataatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCAGAACTCGTTGCTGGACATACTTG
         | | | | | |       |  || | | ||||      |  ||     ||     ||  ||   |      |||  |   || || | ||   ||||||||| || ||||| ||   |||||| ||  ||||||| ||||| ||||  |||||||| || |||||||||||||||||||||||||| || || ||||
atacttgcctcttactggcgtttccaatatttgtttgtgctctctgcggcatggacctttccttagttcagaaa------aacaaactcatttggttatgccgcagATAAATGCGGATGGCGTGAAGAGGAACTTCTACCCTGGCGACAAGCTACCCCTGTGGCACGACGAGCTGGAGCCCCAGAACTCGTTGCTTGATATTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88260289|gb|CI362582.1|CI362582
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|86496862|gb|CI139495.1|CI139495
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88482025|gb|CI419296.1|CI419296
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCCTGGAGACAAACTACA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: gi|8527814|gb|AU092629.1|AU092629
EST:     TTGCTATANCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCNCCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88470046|gb|CI407317.1|CI407317
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88503126|gb|CI430632.1|CI430632
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88514156|gb|CI441662.1|CI441662
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|86535862|gb|CI176068.1|CI176068
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88271757|gb|CI387810.1|CI387810
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCAGCCCTGGAGACAAACTACA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: gi|88961062|gb|CI096465.1|CI096465
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|218488196|gb|FG970072.1|FG970072
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|11233281|gb|AU164713.1|AU164713
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88320707|gb|CI525649.1|CI525649
EST:     TGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|25799545|gb|CA755506.1|CA755506
EST:     TGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88517598|gb|CI445252.1|CI445252
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|87028372|gb|CI263714.1|CI263714
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88503321|gb|CI430827.1|CI430827
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88671264|gb|CI723184.1|CI723184
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|218498714|gb|FG963991.1|FG963991
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATT-CACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88974504|gb|CI022045.1|CI022045
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|86513098|gb|CI155731.1|CI155731
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|86533509|gb|CI173715.1|CI173715
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88318949|gb|CI510744.1|CI510744
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCAGCCCTGGAGACAAACTACA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: gi|88677292|gb|CI729950.1|CI729950
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88379765|gb|CI503964.1|CI503964
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88551157|gb|CI481189.1|CI481189
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|16754672|gb|BM039051.1|BM039051
EST:     TGCGTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TGC-TATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88261543|gb|CI365119.1|CI365119
EST:     TGCTATAGCCCGTGATGGTGGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TGCTATAGCCCGTGATGGT-GCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88965355|gb|CI011606.1|CI011606
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88829940|gb|CI004978.1|CI004978
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88281960|gb|CI403356.1|CI403356
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88242742|gb|CI242591.1|CI242591
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|86491932|gb|CI134565.1|CI134565
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88846360|gb|CI373128.1|CI373128
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|66919202|gb|CX106050.1|CX106050
EST:     TGCTATAGCCCTGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TGCTATAGCCC-GTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|86595130|gb|CI260369.1|CI260369
EST:     TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88261592|gb|CI365168.1|CI365168
EST:     TTGCTATAGCCCGTGAT-GTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAACGCAGATTGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|88997224|gb|CI389890.1|CI389890
EST:     TTGCTATAGCCCCTGATGGTGCTAGTGGAGGGTTTGTTCCTACCGTCACT                         ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: gi|3761046|gb|C98300.1|C98300
EST:     TGCTATAGCCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT                         ATAAAACGCAGATGGTGTTTCCGAGGAAATTTCACCCTGGAGACAAACTAC
genomic: TGCTATAG-CCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagAT-AAACGCAGATGGTGTTT-CGAGGAAATTTCACCCTGGAGACAAACTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 65 (downstream exon)
Score: 16

AAGTTTGTGGTTAAGGTAGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCAGAACTCGTTGCTGGACATACTTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttttctgaaagaccaatgattcttgaacttatggatatgataatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCAGAACTCGTTGCTGGACATACTTG
                                      atatgataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattttaagttgaggcatgtcttgttatctttgcttaaaatgctattacttttctgaaagaccaatgattcttgaacttatggatatgataatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAACTGTGGCATGAAGAGCTGGAGCCCCAGAACTCGTTGCTGGACATACTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - -ggcatgt
- - - - - - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattct