1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttggactcctgtcaccgctgtagactttcagtaatgcaccagtagggtatattgatccttgctttgaagttaacttgctgaggatttccgatcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCC
species | Oryza sativa |
transcript | LOC_Os02g52420.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACA GGACCATGCAGATAAATTCAAGTTTGGTGTAGTGGGACAGTTCGTCGGTCAEST: gi|313084050|gb|HO213833.1|HO213833
genomic: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAgtacgtaaac ... atcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCA
EST: ATCAAACGTATTGGTCGAACTATACA GGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCAEST: gi|86494445|gb|CI137078.1|CI137078
genomic: ATCAAACGTATTGGTCGAACTATACAgtacgtaaac ... atcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCA
EST: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACA GGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCAEST: gi|29657570|gb|CB653845.1|CB653845
genomic: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAgtacgtaaac ... atcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCA
EST: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACA GGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCAEST: gi|86492814|gb|CI135447.1|CI135447
genomic: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAgtacgtaaac ... atcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCA
EST: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACA GGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCA
genomic: TCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAgtacgtaaac ... atcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCA
ggtatattgatccttgctttgaagttaacttgctgaggatttccgatcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCC
agttaac putative branch site (score: 3)
tcttcat putative PPT
aagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggactcctgtcaccgctgtagactttcagtaatgcaccagtagggtatattgatccttgctttgaagttaacttgctgaggatttccgatcttcatagGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -ctcctgt
- - - - - - -accgctg
- - - - - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctga