1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaaactgcaagtatgatcctgcacatctgcacaactggtagtgtaattctttcatttcagtgctagtatgagttgctcactggattcttcctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGGTATAACTTCACAAGTTTTTC
species | Oryza sativa |
transcript | LOC_Os02g51410.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATG GCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAEST: gi|29661027|gb|CB657302.1|CB657302
genomic: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGgtgactactt ... cctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCA
EST: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATG GCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAEST: gi|29660283|gb|CB656558.1|CB656558
genomic: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGgtgactactt ... cctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCA
EST: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACTATG GCTTTTTCTAAACTCATCATGCTCEST: gi|29660344|gb|CB656619.1|CB656619
genomic: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGgtgactactt ... cctatcttagGCTTTTTCTAAACTCAGCATGCTC
EST: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATG GCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTTATGCEST: gi|29636670|gb|CB641679.1|CB641679
genomic: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGgtgactactt ... cctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTT-ATGC
EST: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATG GCTTTTTCTANACTCAGCATGCTCGCGGAGCAAAGGGGCGA
genomic: CTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGgtgactactt ... cctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGA
aattctttcatttcagtgctagtatgagttgctcactggattcttcctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGGTATAACTTCACAAGTTTTTC
tgctcac putative branch site (score: 28)
ttcttcctatctt putative PPT
tttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaactgcaagtatgatcctgcacatctgcacaactggtagtgtaattctttcatttcagtgctagtatgagttgctcactggattcttcctatcttagGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGGTATAACTTCACAAGTTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -aactgca
- - - - - - - - -tcctgca
- - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgct