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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctcttggattaggcttttgttgtttgtaacattcacaataaagtaattgacaagcatagcaactgcatattctgagcattgattcatgcaactttgtcttcagAAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTTGGGAGCCAAGCAGTCATTACTGGCACCTTTTCAATTATCAAGCAGTGCTC

Basic information

species Oryza sativa
transcript LOC_Os02g49760.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29635658|gb|CB640667.1|CB640667
EST:     CCACAGCTTTGAGAATGCTTATCATATTGGATTCTATGTGTCAGTACCAG                         AAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTTG
genomic: CCACAGCTTTGAGAATGCTTATCATATTGGATTCTATGTGTCAGTACCAGgtactctctt ... ttgtcttcagAAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTTG
EST: gi|58604945|gb|CK032978.1|CK032978
EST:     CACAGCTTTGAGAATGCTTATCATATTGGATTCTATGTGTCAGGTACCAG                         AAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTT
genomic: CACAGCTTTGAGAATGCTTATCATATTGGATTCTATGTGTCAG-TACCAGgtactctctt ... ttgtcttcagAAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTT
EST: gi|58669182|gb|CK057868.1|CK057868
EST:     CCACAGCTTTGAGAATGCTTATCATATTGGATTCTATGTGTCAGTACCAG                         AAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTTG
genomic: CCACAGCTTTGAGAATGCTTATCATATTGGATTCTATGTGTCAGTACCAGgtactctctt ... ttgtcttcagAAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaagcatagcaactgcatattctgagcattgattcatgcaactttgtcttcagAAAAACTTAGATGGCCTGTTCTGGTGATTGCTATACTAGCAGCTGTGGTTGGGAGCCAAGCAGTCATTACTGGCACCTTTTCAATTATCAAGCAGTGCTC
                                           ctttgtcttc  CT-rich tract
                  atattct  TA-rich tract