1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggttgttctgactactagtgaaacgtgttatcccacctatattctgaagctatgaagtactgagcatgaaattccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGTGCAGAAAAGGCCCGTATTCTAGTCAGCAAGATTCCAG
species | Oryza sativa |
transcript | LOC_Os02g48830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGA GATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGTEST: gi|58671701|gb|CK060387.1|CK060387
genomic: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGAgtatggttgt ... ccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGT
EST: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGA GATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGT
genomic: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGAgtatggttgt ... ccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGT
tatcccacctatattctgaagctatgaagtactgagcatgaaattccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGTGCAGAAAAGGCCCGTATTCTAGTCAGCAAGATTCCAG
ttccttttgc CT-rich tract
tatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttgttctgactactagtgaaacgtgttatcccacctatattctgaagctatgaagtactgagcatgaaattccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGTGCAGAAAAGGCCCGTATTCTAGTCAGCAAGATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA