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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacctaaagtatttggtatgtttgataagttttctttcagcagtgcatctgttgttttttctcatttatttgttttgacacatttagGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACA

Basic information

species Oryza sativa
transcript LOC_Os02g48370.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g48370.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G421899_T03 (Zea mays), 3'ss of exon 6
gtaagaacctaaagt---atttggtatgtttgataagttttctttcagcagtgca---tctgttgttttttctcatttatttgttttgacacatttagGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACA
|||     |   | |   ||    ||    | || | |||||| |    | ||     | |  | ||||||||    ||| | |  ||| |  |||||| || |||||||| |||||||||||||||||||||| |||| |||||  |||  |  |||||||||| || ||  |
gtacacttcatgattttaatacaatacacatcatgatttttctcttgctaatgtgcactatactattttttcttgcgtatctttcatgatatgtttagGGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCTGCTCAAAAATAAATAAGTCTGA

upper sequence: LOC_Os02g48370.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G110109_T01 (Zea mays), 3'ss of exon 7
-------gtaagaacctaaagtatttggtatgtttgataagttttcttt-cagcagtgcatc-tgttgttttttctcatttatttgttttgacacatttagGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACA
         |  | | |   | |     || |  | || | ||||  || |    |||||   |||| |||| |||||| ||| | |  ||| | ||||||| || |||||||| |||||||||||||||||||||| |||| |||||  ||| ||  |||||| ||| || |||||
gtacacttcataacctttttgaacacaatacgcatcatgattttttcttgctaatgtgcactatgttattttctctcatgtatctttcatgatatatttagGGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCCGCTCAAAAACAAATAAGTCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcagcagtgcatctgttgttttttctcatttatttgttttgacacatttagGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACA
                                        ttttgac  putative branch site (score: 3)
                      ttttttctcatttatt  TA-rich tract