1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgctctggaaacatatcataaataaatttttgtttagtaatttggcatctgctaactttgtgcttctgttgaacatttcattactgaagGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCATTCCTAAAGCCATTTCCCAGCCACTCTAACTTTATTC
species | Oryza sativa |
transcript | LOC_Os02g47940.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAG GAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCEST: gi|88832337|gb|CI019278.1|CI019278
genomic: CAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGgtatgtgctc ... attactgaagGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTC
EST: GACTTATTTAGAG GAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCEST: gi|29641903|gb|CB646910.1|CB646910
genomic: GACTTATTTAGAGgtatgtgctc ... attactgaagGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTC
EST: CAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAG GAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTC
genomic: CAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGgtatgtgctc ... attactgaagGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTC
tagtaatttggcatctgctaactttgtgcttctgttgaacatttcattactgaagGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCATTCCTAAAGCCATTTCCCAGCCACTCTAACTTTATTC
tgctaac putative branch site (score: 16)
tttcatt putative PPT
atttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctctggaaacatatcataaataaatttttgtttagtaatttggcatctgctaactttgtgcttctgttgaacatttcattactgaagGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCATTCCTAAAGCCATTTCCCAGCCACTCTAACTTTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA