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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtagtgtcttgttctaacttgattcatgagtttgacatagattgtccataaatagtggcttaacacttaactaatctcatgtggatcttatcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58595654|gb|CK006182.1|CK006182
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|163923153|gb|EG709322.1|EG709322
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|58683626|gb|CK072313.1|CK072313
EST:     GGCCACGAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|88256807|gb|CI354588.1|CI354588
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|88664333|gb|CI687436.1|CI687436
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|58675617|gb|CK064304.1|CK064304
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|163918501|gb|EG711431.1|EG711431
EST:     GACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccataaatagtggcttaacacttaactaatctcatgtggatcttatcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA
                        aactaat  putative branch site (score: 2)
                                         tcttatc  putative PPT
                      ttaactaat  TA-rich tract