1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtcccatgttattgaactacgttgacctattaataagccgtacggatggcaaaagctcttttgaggtataactagatatggttgcacatattttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCAGTTTTCCATTGAAAAAGCTTTTCGTGGTGGATGGGTCTACCAGATCAA
species | Oryza sativa |
transcript | LOC_Os02g45650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCG CTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCEST: gi|38468400|gb|CF952531.1|CF952531
genomic: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCGgttagtatct ... attttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTC
EST: TGAC-ATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCG CTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCEST: gi|58661916|gb|CK050596.1|CK050596
genomic: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCGgttagtatct ... attttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTC
EST: GACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCG CTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCEST: gi|58589625|gb|CF987933.1|CF987933
genomic: GACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCGgttagtatct ... attttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTC
EST: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCG CTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAEST: gi|88328438|gb|CI676643.1|CI676643
genomic: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCGgttagtatct ... attttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCA
EST: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCG CTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTC
genomic: TGACAATATACCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCGgttagtatct ... attttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTC
gatggcaaaagctcttttgaggtataactagatatggttgcacatattttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCAGTTTTCCATTGAAAAAGCTTTTCGTGGTGGATGGGTCTACCAGATCAA
gtataac putative branch site (score: 50)
acatattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcccatgttattgaactacgttgacctattaataagccgtacggatggcaaaagctcttttgaggtataactagatatggttgcacatattttaacagCTTCCAGAAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCAGTTTTCCATTGAAAAAGCTTTTCGTGGTGGATGGGTCTACCAGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- tcccatg
- - - - - - - - - - - - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc